Gene detail information of Glyur000359s00016718 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59600.1 | 5.00E-162 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004507163.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Cicer arietinum] |
| Swissprot | tr|Q9FGR2|PP436_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g59600 |
| trEMBL | tr|I1LJY8|I1LJY8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00359 | 117259 | 118914 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000359s00016718.1 | PF01535.15 | PPR | 69 | 91 | 1.1 |
| Glyur000359s00016718.1 | PF01535.15 | PPR | 99 | 123 | 0.015 |
| Glyur000359s00016718.1 | PF01535.15 | PPR | 172 | 196 | 0.45 |
| Glyur000359s00016718.1 | PF01535.15 | PPR | 200 | 230 | 8.90E-05 |
| Glyur000359s00016718.1 | PF13041.1 | PPR_2 | 232 | 280 | 3.90E-13 |
| Glyur000359s00016718.1 | PF13041.1 | PPR_2 | 368 | 417 | 1.00E-08 |
| Glyur000359s00016718.1 | PF01535.15 | PPR | 445 | 468 | 0.21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.664 |
| SRR1783600 | control | 1.771 |
| SRR1783602 | moderate drought stress | 1.798 |
| SRR1811619 | moderate drought stress | 1.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.054 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.043 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.943 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.903 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.993 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.967 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.228 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.873 |
| SRR2868004 | Drought Stress (root) | 1.557 |
| SRR2967015 | Control (root) | 1.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.425 |
| SRR9715740 | Leaf | 0.902 |
| SRR9715741 | Leaf | 0.593 |
| SRR9715739 | Root | 0.907 |
| SRR9715742 | Root | 1.766 |
| SRR9715743 | Root | 1.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.099 |
| SRR8749028 | MeJA induced 9h | 2.997 |
| SRR8749029 | MeJA induced 9h | 4.429 |
| SRR8749030 | Uninduced | 1.146 |
| SRR8749031 | Uninduced | 0.363 |
| SRR8749032 | Uninduced | 1.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.335 |
| SRR8400027 | Control - Root | 2.059 |