Gene detail

Gene detail information of Glyur000359s00016717

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G46740.1	0	translocon at the outer envelope membrane of chloroplasts 75-III
NR	XP_004507162.1	0	PREDICTED: protein TOC75, chloroplastic-like [Cicer arietinum]
COG	YP_007128216.1	2.00E-45	Beta-barrel assembly machine subunit BamA [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q43715\|TOC75_PEA	0	Protein TOC75, chloroplastic (Precursor)
trEMBL	tr\|G7JCF5\|G7JCF5_MEDTR	0	Translocon at the outer envelope membrane ofs protein 75-III {ECO:0000313\|EMBL:AES88916.1}

Sequence

Transcript Sequence

>Glyur000359s00016717.1
GTTATAAATCACGTTTATTAGAACCCAGNACATTAAATATGTTTGTTTAACTGTTCATGAACGGTTGAGCACGTTGCCAGGAAGAAACTNTGAAGAAGAGCAGAAGAAAATTGTCGCTTTTGTGTGAACGTGCGTTCGAATTGTACAGAAACAAACACGCTGGTAATACATTTTTTTGTGATCGTTGGATCGGGATTTTCTTGTATGGTAAAATGAAATGTTAAAAACNTAGTAGAACAGAGGAACAATCGAAAACCCATCAAAACCCCTGCGGTTTGTCTCCTTGCTCACACACACTTGCGAGTTGCGACCATGCCTTCTTCCTTTGCCGCTTCCAAACGCTTCACCCCTTCGCTATCAGGCCCTCACCGCCGCAACCAACCCCCGCGACCTTCTTCCCTCAAATGCCAATTCTCCAATTCCGACCACCATGAATTCTCTAACTCCACCCTTTTCAAAACCCTCTCCGCCGCCACCGTCGCCGTATCCTCCGCAGCCGCACTCTTCCACACCCACCCACTCCATTTCCTCCTCCCCGATTTCACCGGTGGCAATGCAGGCGGAGGAGTTGGAGGACCAGGAACCGGCGGCAGCGGCGGAGGAGGAGGAGGAGGCTGGTTTAACGGCGGCGAAGGGTCCTTCTGGTCAAGCCTCTTCCCCCCGGCGAGGGCAATCGCCGATGAATCGAAGTCACAGGACTGGGATTCTCACGACCTACCTGTGAACATGGTGGTTCAGGTGAACAAGCTAAGCGGGTTCAAGAGGTACAAAATCTCAGAGATCGTGTTCTTCGATCGGAGCAATAAAACAAAAATCGGAACAGAAGACTCGTTCCTAGAGATGGTGTCTCTCAGGCCAGGAGGCGTNTACACGAAGGCTCAGCTACAGAAGGAACTAGAGAGCCTCGCAACGTGCGGAATGTTCGAGAAGGTTGACCTTGAAGGAAAAACCAACGCCGACGGGTCACTATCACTAACGGTATCGTTCACGGAGAGCACGTGGGAGAAAGCGGAACGGTTCAGGTGCATCAACGTGGGCCTGATGGCGCAATCGAAGCCCATAGAGGTGGACCCTGACATGACCGATAAGGAGAAGCTTGAGTTCTTCCGGAGACAGGAGAGGGATTACAAGAGGAGAATGGAGAATGCACGGCCGTGCATGTTGCCGGTGTCGGTGCACAAGGAGATTGCTGACATGCTGAGGAAGCAAGGCACGGTTAGTGCCAGGCTGTTGCAGAGGATAAGGGACCGTGTCCAGAGGTGGTACCATGAGGAAGGATATGCCTGTGCGCAGGTGATTAATTTCGGGAACCTCAATACACGGGAGGTCGTGTGTGAGGTTGTCGAAGGGGNTATCACCCAGTTGTCCATTCAGTTCCTTGATAAGCTTGGGAATGTTGTTGAAGGCAACACTCAAATCCCCGTTCTGAAAAGAGAACTTCCCAGACAGCTTCGCCCGGGTTATACTTTTAACATTGAGGCNGGGAAGCAGGCTTTGAGGAATATAAATTCCCTTGCTTTGTTTTCCAACATCGAGGTGAATCCGCGNCCTGATGAGAAGAACGAGGGAGGCATAATTGTTGAGATCAAGCTGAAAGAGCTGGAGCAGAAAACGGCTGAAGTCAGTACTGAATGGAGTATCGTCCCTGGGCGAGGAGGGCGTCCCACTTTGGCTTCGCTGCAGCCNGGAGGGACTGTTACTTTTGAACATCGGAATCTGCAGGGATTGAATAGATCTATTACCGGTTCTGTGACAACTAGCAACTTCCTCAATCCTCAGGATGATCTTGCATTTAAGCTTGAGTATGCACANCCATATTTGGATGGTGTAGATAATCCACGCAATCGAACTCTCCGTGTAAGCTGCTTCAATAGCCGAAAGCTGAGTCCGGTATTCATTGGGGGGCCAGGGGTGGATGATGTGCCCCCAATATGGGTTGATCGTTCTGGTGTAAAAACCAATATCACAGAGAATTTTACTCGTCAGAGTAAATTCACTTATGGATTAGTGATGGAAGAGATAACAACACGAGATGAAACTAATAATATCTGTGCCAATGGTCAAAGAGTGTTGCCTAATGGAGGAATTAGTGCAGATGGACCTCCAACCACCCTCGGTGGTACTGGCATCGACAGGATGGCGTTTTTACAGGCAAATATTACAAGGGATAACACAAGGTTTGTGAATGGATCTATAGTTGGAAGCAGGAATGTGTTCCAGGTAGATCAAGGCCTTGGCATTGGCAGCAAGTTCCCATTCTTTAACCGTCACCAGTTAACGGTGACACGGTTTTTCCAGTTGAAGTCTGTGGAGGAAGGGGCTGGTAAACCACCACCACCGGTGCTGGTCCTCCATGGCCGCTATGGTGGCTGTGTAGGTGACCTTCCAAGCTACGATGCTTTTATTCTCGGGGGTCCCTATTCCGTAAGGGGTTACAACATGGGTGAGATTGGAGCAGCCAGAAACATCCTCGAGTTGGCAGCTGAGCTACGGATACCTATTAAAGGTACACACGTGTATGCCTTTGCAGAACATGGCAATGATCTCGGAAGTTCGAAAGATGTCAAAGGGAATCCGACAGAAGTCTATAGGAGAATTGGTCAAGGATCCTCTTATGGTGTTGGTGTCAAGCTTGGTTTAGTAAGAGCAGAATATGCCGTTGATCATAACTCGGGAACAGGTGCAATATTTTTCCGTTTCGGAGAGAGATTTTGAGGTGCACATTAGTCGTAGTATACTGTTTGATTATGTTTGGTTCTTTTCGTTTGCGGAGGAAACCTCTCAGCTAATTGGTTTCATAGGTGCTTGAATCTTTGCCGTAGAATTTGGTTTAAGTCATTAAGTGAACTTCATGCTGGTGCTGGGCTTGGGTTTTCCGTAGGGTAATTACTCTGAAAACGTAGTGATTCTTATATACCTTTTTTTCTCCTTGTGAATATTGTTGTTGAAATTTTAGGGATTGGAATTTTGATATTAGTCTCTCAAATTTCATAAGTTGATGAAGAATTGCGCCAAATATTTCTCTTCCCTTACCAATTGTNGTTTAGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	111181	116146	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006886 intracellular protein transport

cellular_component
GO:0019867 outer membrane

molecular_function
GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016717.1	PF07244.10	Surf_Ag_VNR	152	227	0.00016
Glyur000359s00016717.1	PF07244.10	Surf_Ag_VNR	363	429	9.20E-05
Glyur000359s00016717.1	PF01103.18	Bac_surface_Ag	468	800	1.80E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.217
SRR1783600	control	7.206
SRR1783602	moderate drought stress	8.068
SRR1811619	moderate drought stress	7.956

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.258
DRR006520	Root Summer glycyrrhizin high producing strain	13.201
DRR006521	Root Winter glycyrrhizin high producing strain	5.954
DRR006522	Root Winter glycyrrhizin high producing strain	5.784
DRR006523	Root Summer glycyrrhizin low producing strain	20.698
DRR006524	Root Summer glycyrrhizin low producing strain	20.759
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.384
SRR2868004	Drought Stress (root)	12.070
SRR2967015	Control (root)	13.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.785
SRR9715740	Leaf	3.670
SRR9715741	Leaf	3.512
SRR9715739	Root	7.192
SRR9715742	Root	13.067
SRR9715743	Root	12.418

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.818
SRR8749028	MeJA induced 9h	8.320
SRR8749029	MeJA induced 9h	6.737
SRR8749030	Uninduced	2.921
SRR8749031	Uninduced	1.150
SRR8749032	Uninduced	2.429

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.666
SRR8400027	Control - Root	14.602