Gene detail

Gene detail information of Glyur000359s00016714

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59250.1	0	Major facilitator superfamily protein
NR	XP_007132040.1	0	hypothetical protein PHAVU_011G061800g [Phaseolus vulgaris]
COG	YP_004290515.1	1.00E-97	sugar transporter [Methanobacterium sp. AL-21]
Swissprot	tr\|Q0WWW9\|XYLL3_ARATH	0	D-xylose-proton symporter-like 3, chloroplastic (Precursor)
trEMBL	tr\|V7AES0\|V7AES0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW04034.1}

Sequence

Transcript Sequence

>Glyur000359s00016714.1
CCCAGAGCAATAATTTGACAAATATCTTGCACAATCTGACTGTGCTTCGTGCATCACACACGGGGTCCATTTACTTTCCAAGATTCACAAACAGATAACAAACCACGATGATTCCTCACTCCTGATTGATTCCACATACATACACTATCTCTTGTTACTTCTTGCTACCTCAAATGGCATCATCAACTACTCTCTCCAATTTCAATTCCACGCTCTCTCTGTTTAACTCCTCACTTGACCATCAAAGGATAATAAAGAGGTCAAGAAAGGCTCTGGTCTCCTCCTCTCGCAACAACCCGCGCCTCATTTCTTCCATTAACCATCATTTGGCGCCAACTTATCCGCTTCTCACCTCTTCCTCTGCTCCCAACCGCAGATTCCACGTTAAAGCGCAGAAGGAGTACTCTGCTGGGGACAAANCTGAGTCGCTTGTTCCTGACGCAACTTACCCAGAGCAATTTTCTTGGTCTTCTGTAATCCTTCCGTTTCTGTTNCCTGCATTGGGTGGCTTGTTATTTGGTTATGATATTGGTGCCACCTCCGGTGCTACAATTTCACTGCAGTCACCTGAGCTTAGCGGCACAACTTGGTTCANTCTCTCTTCTATTCAGCTTGGACTTGTGGTCAGTGGTTCCCTATATGGGGCTCTTTTTGGCTCACTTACTGCATATGCCATTGCTGATTTCCTTGGGAGGAAGCGACAACTCATTGTTGCAGCCCTGTTGTATTTACTTGGTGGTGCAATCACTGCCTCTGCACCAGAACTCNGTGTTCTCTTAGCAGGAAGGCTGCTTTATGGACTTGGTATAGGTTTGGCCATGCATGGGGCTCCTTTATATATTGCAGAAACTTGTCCATCACAAATCCGTGGGACTCTAGTATCATTAAAAGAACTCTTCATTGTCCTGGGGATTCTGGTTGGTTATTTTGTGGGAAGCTTTCAGATTAATGCAGTTGGGGGATGGCGGTTCATGTATGGATTTAGTGTTCCACTTGCTATGNTAATGGGGCTTGGAATGTGGACTCTCCCTCCCTCTCCACGGTGGTTGCTTCTCAAAGCAGTACAAGGAAAAGGTTCTTTTCAAGACCTGAAGGAAAAGGCAATTTCTTCCCTAAGCAAATTAAGGGGCCGACCACCCGGTGACAAAGAATCTGAGAGGCAAATAGAAGAGACCCTTGTCTCACTGAAGTCTGCCTATGAGGATCAGGAATCAGAGGGGAATTTCTTAGAGGTGTTTCAGGGGCCCAATCTGAAAGCCTTCATAATTGGTGGGGGGCTAGTATTATTTCANCAGATAACAGGTCAACCTAGTGTTCTGTATTATGCAGGTTCGATTCTTCAGAGTGCTGGATTTTCTGCTGCATCTGATGCTACTAAAGTTTCAGTTGTTATTGGCTTATTCAAGTTACTAATGACATGGGTTGCTGTCCTAAAAGTAGATGATTTGGGGAGAAGGCCTCTGCTGATTGGAGGTGTCAGTGGCATTGCCGTTTCTTTAGTTCTCCTTTCTGCTTATTATAAGTTTCTCGGAGGGTTACCAGTTGTTGCTGTTGTGGCTTTACTTCTCTATGTTGGTAGCTACCAGATATCATTTGGGCCAATAAGTTGGCTTATGGTATCAGAAATCTTCCCGATTCGCACTAGAGGACGCGGGATTAGTNTGGCTGTTCTTACCAACTTTGCTTCAAATGCTGTTGTCACCTTTGCCTTCTCGCCATTAAAGGAGCTTCTAGGAGCAGAGAACCTGTTTCTCCTTTTTGGGGCCATTTCTTTACTGTCACTTCTGTTCATTGTATTTTCTGTCCCGGAGACAAAAGGCTTGAGCTTAGAAGATATTGAATCCAAAATCTTGAAGTGACAGCTTAAACTAGCACCTTTTGATGTGAGTGCAATATAGTTTGTCACTTTGTNTATATCTCCTGTGTGTGGGATTTGATGGTCATGGTAATGCTTGCAAGTTGCAATAAGAGGACGAGATGATAATCTCTAATCATTTACTCAAATCATATAAGGGTGCTAACTCNTGATTTTAGTATCCCTGATTCAATTGCCATACTAATGGAGGCTATGACCGTATGTAACTCGGTACCAGTGTTTTCTACACGCTAAGTTGAGTTGGTCAACTTTTTTTTACCGACCATTGTAACCCTTACTTTCTGATTATATGGTGTNCATTTCTATTTTCAAATTGTAAAATAAAATCCACGTTAAAACTGCTAATTAAAGTGACCATGGAAAAAAGGGGAAGTGCCTTATTTTTGCTCATAACTACAGAACATTTCGTTGCCAAAACAAAAACTGAAGTATACGTATATGTAATGATATACAGATATACAATGTATCCTTCAGGTCATTACACCCAGGACACACAACTTATTACATACAAATTGAATTTTACAAATATAAAGGAAATTATGATCTTTCCAGCCTAATTATAGGGGTACATAAACATAAAGGTTAATACATACACAAAAATGCAACAAACAAATCATAGGGACTTTCAATTTGCCTGAAGAATCCTGCCATGGTTTTCTTCCTCAACAACTGCATATGTAGAAAGATCATATGAAACATTGGTTAATCAGTAGAGACAAAGCTNTTCATATGAAAAGAAAAATAAAATTAAATGATACGACCAAATAGAAGATATCATTGAGTGCATGAATGAACTGGTTCATTACCTTGTTCAGCATGGGAAGATACAGGGAGTTGAGACGAAGCACGAGTAGTGTTGGTAGATGCTGGGGTTTGAGATGAAGCGCGAGCAGTGTTGGTAGATTTTGGGGATTGAGATGATGTGCGAGCCGTGTTGGTAGATGTTGGTGTTTGGGATGATGTGCGAGTAGTAGGACTTGAGTTTGCATCTGCATATTTTGTTGGTTCCTCATTTCGGAGCAAAGAAGTTACAGCTTCTCTCACCTTCTCCATCACACCTGCATCACCAGGAGTTCTCCTAGGACTCATTGCTTCAGATATCACCCGTGACAGAGCTTTCTCATCTTCCCCTGGTTCAAGCTTGTTCATCAAGTACTCCTTCACCGAAACACCCTTGTCCCATATCTGTGAGGTGGGGCTGGTAGCAGTATTCCTCCCNCACGGTGGAGCAGACGCGGGTGGTGAAGGCGGAGGAGTCGTCACCGTCGGAGCCGATGAAGTTCGAGTGTCGCTTGAACAAATTTGGGATGGCATCTTAGCAGGAGGGGTACGTGTAGCACCAAGGGACAGTGAAGTTGGTTGAGTTTTTGCACGTAAAGCTGTTGTTGTTGATGATAAATTATTGTGATGCTCTGCAGGTTTGGAAACTGTGAGGCCTTGCATTTTCGAGGTTACAGAGTGGGGTGCTTCAGATCCTTCAGCATGAGTTGGTGTCATGTTCTTCTCTGCTATGGTTTTGGTCACTGTCTTGTTTGGACTAGAGAGTGTAACAGTAGCAGTAGCAGCAGCAGCATTTGGAGATGTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	100969	107217	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016714.1	PF00083.19	Sugar_tr	108	556	2.10E-92
Glyur000359s00016714.2	PF00083.19	Sugar_tr	59	168	2.20E-18
Glyur000359s00016714.2	PF00083.19	Sugar_tr	268	436	1.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.355
SRR1783600	control	10.315
SRR1783602	moderate drought stress	11.057
SRR1811619	moderate drought stress	10.723

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.946
DRR006520	Root Summer glycyrrhizin high producing strain	18.676
DRR006521	Root Winter glycyrrhizin high producing strain	11.636
DRR006522	Root Winter glycyrrhizin high producing strain	11.021
DRR006523	Root Summer glycyrrhizin low producing strain	15.534
DRR006524	Root Summer glycyrrhizin low producing strain	15.388
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.701
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.702

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.059
SRR2868004	Drought Stress (root)	9.116
SRR2967015	Control (root)	15.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.110
SRR9715740	Leaf	26.236
SRR9715741	Leaf	17.574
SRR9715739	Root	14.118
SRR9715742	Root	6.854
SRR9715743	Root	7.258

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.830
SRR8749028	MeJA induced 9h	3.106
SRR8749029	MeJA induced 9h	1.797
SRR8749030	Uninduced	1.916
SRR8749031	Uninduced	1.111
SRR8749032	Uninduced	1.152

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.753
SRR8400027	Control - Root	19.850