Gene detail information of Glyur000359s00016708 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46780.1 | 9.00E-128 | plastid transcriptionally active 16 |
| NR | XP_003537975.1 | 0 | PREDICTED: protein TIC 62, chloroplastic-like [Glycine max] |
| COG | YP_007124608.1 | 2.00E-08 | NmrA-like family protein [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q8SKU2|TIC62_PEA | 2.00E-16 | Protein TIC 62, chloroplastic (Precursor) |
| trEMBL | tr|I1LJY2|I1LJY2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EMBL:ACJ61485.1, ECO:0000313|EnsemblPlants:GLYMA11G14410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00359 | 78637 | 82623 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000359s00016708.1 | PF13460.1 | NAD_binding_10 | 108 | 290 | 8.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.302 |
| SRR1783600 | control | 2.213 |
| SRR1783602 | moderate drought stress | 4.457 |
| SRR1811619 | moderate drought stress | 4.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.263 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.158 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.569 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.842 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.053 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.005 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 206.148 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 204.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.645 |
| SRR2868004 | Drought Stress (root) | 4.413 |
| SRR2967015 | Control (root) | 3.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 187.422 |
| SRR9715740 | Leaf | 180.683 |
| SRR9715741 | Leaf | 153.462 |
| SRR9715739 | Root | 6.745 |
| SRR9715742 | Root | 3.941 |
| SRR9715743 | Root | 4.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.624 |
| SRR8749028 | MeJA induced 9h | 15.446 |
| SRR8749029 | MeJA induced 9h | 8.739 |
| SRR8749030 | Uninduced | 9.041 |
| SRR8749031 | Uninduced | 7.069 |
| SRR8749032 | Uninduced | 11.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.019 |
| SRR8400027 | Control - Root | 10.187 |