Gene detail information of Glyur000359s00016707 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53820.1 | 2.00E-14 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_003606728.1 | 1.00E-40 | Zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q9SR34|TAC1_ARATH | 8.00E-15 | Transcriptional regulator TAC1 |
| trEMBL | tr|A0A072UWD4|A0A072UWD4_MEDTR | 5.00E-41 | Transcriptional regulator superman protein {ECO:0000313|EMBL:KEH30185.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00359 | 71384 | 74828 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000359s00016707.1 | PF13912.1 | zf-C2H2_6 | 21 | 43 | 0.0015 |
| Glyur000359s00016707.1 | PF13912.1 | zf-C2H2_6 | 166 | 188 | 0.0015 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.121 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.119 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.090 |
| SRR2868004 | Drought Stress (root) | 0.222 |
| SRR2967015 | Control (root) | 0.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.136 |
| SRR8749028 | MeJA induced 9h | 7.908 |
| SRR8749029 | MeJA induced 9h | 20.618 |
| SRR8749030 | Uninduced | 22.052 |
| SRR8749031 | Uninduced | 24.307 |
| SRR8749032 | Uninduced | 7.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.018 |
| SRR8400027 | Control - Root | 0.040 |