Gene detail

Gene detail information of Glyur000359s00016705.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29260.1	8.00E-112	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004507158.1	0	PREDICTED: tropinone reductase homolog [Cicer arietinum]
COG	YP_004658067.1	2.00E-85	Tropinone reductase I [Runella slithyformis DSM 19594]
Swissprot	tr\|Q9ASX2\|TRNH1_ARATH	1.00E-110	Tropinone reductase homolog At1g07440
trEMBL	tr\|A0A072UKE5\|A0A072UKE5_MEDTR	1.00E-178	Enoyl-(Acyl carrier) reductase {ECO:0000313\|EMBL:KEH30187.1}

Sequence

Transcript Sequence

>Glyur000359s00016705.2
CATGATTCTACGGTGATTGATTAGAATTGAGAACAAAAAAATGTATCAGGCTTGTCTCTGTGCTATCCCAAATCCAACACCTACACATCCATTGCCGTCAAGCCTCACTCTTTCCCTTCCCTCTTTCAGGCTTAGAAATTCATCACAGTCACAGTCAACTCGCACGAGACCAATTAGGAGCCAACCCATGTTGATGTTGCACTCCCNCACCCCAACACAGCATAGGTGGTCTCTTCACGGAATGACAGCTCTCGTCACCGGTGGAACCCGCGGAATCGGGCATGCCATTGTGGAGGAATTGGTGGGGTTAGGTGCCAGAGTGCATACCTGTTCCAGGAATGAAGATGATCTCAGTAAGTGCCTGAACGAATGGAATGGTTCGGGTTTTGAGGTTACTGGCTCCACTTGTGATGTGTCGGTTCCACAGCAGAGGGAGGCGCTCATGGAGGCTGTCTCCTCTGTCTTCCACGGGAAACTCAACATCCTTATAAACAATGTAGGGACAAATATTCGGAAACCAATGACAGACTTCACAGCCGCAGAGTTTTCNAGTCTCATCGATACCAATTTAGGATCCACCTTTCATATGTGCCAGCTTGCGTATCCACTTCTGAAAGCATCCGGAGTGGGGAGTGTTGTATTTATCTCGTCTGTTTCTGGTTTTGTATCACTGAAGTCAATGTCTGTTCAAGGAGCAACAAAAGGGGCAATTAATCAACTTACAAGAAATCTAGCTTGTGAATGGGCAAAAGACAACATAAGGAGTAATGCAGTTGCACCTTGGTACATCAAAACCTCGATGGTAGAGCAAGTGCTGAGCAACAAANACTATCTGGAAGAGGTATACTCTCGAACTCCTCTTGGGCGCCTAGGAGATCCAGCAGAAGTATCTTCTCTTGTGGCCTTTCTTTGCTTACCAGCATCGTCATACATCACTGGCCAGATTATATGTGTTGATGGAGGAATGTCTGTGAATGGTTTCTACCCAACACAGATCTAAGAATTGCAGCTTACACCACACATCCTGTTTCTTACATAATTTTCCTCTCTACCTGCCACTCCTGTGGAGAATTGGACATGGAAGGCACAGTTCTTGGTCAAGCTCTAGAGTCATAATAAGCTCCGAGTCCACTACAAGACCAGCACTAATACTTGGTATCCCTTCTAGATCCATGGACTATTAATTCCTGCTACGGTGCCATCACAAATTCTTTTCCTACTAAATCACAATGTATGGCCTGTGCTACCAAATGGAAGATTTTCCAATAATTTATATCATTCATATAGCTATAGCTTCCAATTTTACAGGATCAACTTTGATGTTTTCTTAATTCGTCTGTAGGTGGTAGTGGCCGTGTTCTTAATATGATACAATCTTTGGCAAGAATTAGTTGTTTATAGTCTCTATGCTTGGTGGGTTTTTTTTTTTTTCCAATCCTGTTGTATCAAGCAGACTGAGTTTTTGGGTGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	63705	66858	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K08081	TR1	EC:1.1.1.206	Tropane, piperidine and pyridine alkaloid biosynthesis	map00960
			Tropane, piperidine and pyridine alkaloid biosynthesis	map00960

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016705.2	PF00106.20	adh_short	69	235	2.50E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.490
SRR1783600	control	19.441
SRR1783602	moderate drought stress	14.020
SRR1811619	moderate drought stress	13.850

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.197
DRR006520	Root Summer glycyrrhizin high producing strain	13.286
DRR006521	Root Winter glycyrrhizin high producing strain	11.160
DRR006522	Root Winter glycyrrhizin high producing strain	10.842
DRR006523	Root Summer glycyrrhizin low producing strain	6.490
DRR006524	Root Summer glycyrrhizin low producing strain	6.441
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.802

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.180
SRR2868004	Drought Stress (root)	10.774
SRR2967015	Control (root)	11.683

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.248
SRR9715740	Leaf	7.965
SRR9715741	Leaf	6.601
SRR9715739	Root	3.110
SRR9715742	Root	6.346
SRR9715743	Root	6.907

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.015
SRR8749028	MeJA induced 9h	12.158
SRR8749029	MeJA induced 9h	18.010
SRR8749030	Uninduced	24.926
SRR8749031	Uninduced	8.659
SRR8749032	Uninduced	4.560

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.207
SRR8400027	Control - Root	20.093