Gene detail information of Glyur000359s00016703.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06060.1 | 4.00E-46 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003539545.1 | 1.76E-72 | PREDICTED: tropinone reductase homolog At1g07440 isoform 1 [Glycine max] |
| COG | YP_003390554.1 | 5.00E-38 | short-chain dehydrogenase/reductase SDR [Spirosoma linguale DSM 74] |
| Swissprot | tr|Q9ASX2|TRNH1_ARATH | 2.00E-54 | Tropinone reductase homolog At1g07440 |
| trEMBL | tr|I3SNR4|I3SNR4_MEDTR | 2.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:AFK41906.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00359 | 52527 | 54448 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08081 | TR1 | EC:1.1.1.206 | Tropane, piperidine and pyridine alkaloid biosynthesis | map00960 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000359s00016703.1 | PF13561.1 | adh_short_C2 | 46 | 179 | 9.30E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.918 |
| SRR1783600 | control | 3.299 |
| SRR1783602 | moderate drought stress | 10.001 |
| SRR1811619 | moderate drought stress | 9.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.332 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.203 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.095 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.313 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.153 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.773 |
| SRR2868004 | Drought Stress (root) | 2.408 |
| SRR2967015 | Control (root) | 1.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.059 |
| SRR9715740 | Leaf | 0.089 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.024 |
| SRR9715742 | Root | 0.141 |
| SRR9715743 | Root | 0.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.806 |
| SRR8749028 | MeJA induced 9h | 6.048 |
| SRR8749029 | MeJA induced 9h | 4.042 |
| SRR8749030 | Uninduced | 39.189 |
| SRR8749031 | Uninduced | 28.012 |
| SRR8749032 | Uninduced | 16.776 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.138 |
| SRR8400027 | Control - Root | 7.128 |