Gene detail

Gene detail information of Glyur000359s00016702

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G29410.1	1.00E-82	metal tolerance protein B1
NR	XP_004507157.1	0	PREDICTED: metal tolerance protein B-like [Cicer arietinum]
COG	YP_004981061.1	1.00E-46	cation diffusion facilitator family transporter [Geobacillus thermoleovorans CCB_US3_UF5]
Swissprot	tr\|Q6DBM8\|MTPB_ARATH	6.00E-115	Metal tolerance protein B
trEMBL	tr\|I1LJX9\|I1LJX9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G14370.1}

Sequence

Transcript Sequence

>Glyur000359s00016702.1
ATGGGTGTGCATCAGGACAAGATGCCATTCAGTTTGCTGAAGCAAATGGAACACGAGAAAGCTCCTATCTTGGAAGCAAGGTCCACGCAGGAAATTGAGATACCCATTGCCTCTGACAGAGTTGATCTCCTTCCCATGACAAGGGTGTCATCTTGCCATTCTGTTTGTCGTTTTTCCAGACAGGAAAACAGTGTNGGGGCATCATCAAAAGAGTCAGCAAAGTCAGCAAAGAAACTTTCTGTACTCATAGTTTTCTATGCTATTGTTATGGTTGTTGAAGTTATTGGGGGTATAAAATCCCACAGCCTTGCTGTCATCAGTGATGCTGCACACTTGCTTTCTGATATTGCTGGATTCTCCATCTCCCTCTTTGCAGTGTGGGCTTCCGGTTGGGCGGCAACACCGCATCAGTCTTTCGGATACAATCGTCTTGAGGTTTTGGGTGCTCTTTTATCTGTGCAGTTAATTTGGGCCATATCTGGTTTTTTGATATATGAAGCAGTTGGTAGACTTCTTCACCCAAATGCCAGGGTGAATGGAAAGCTCATGTTTGCAATTGCAGCATTTGGGTTTGTTCTTAACTGTATCATGGTTCTATGGCTTGGTCATGATGATAGTCATCACCATGGCTTTGGAGACTCGGATCATGATCATAAGCACCATCAATGCTGTGGTGACTCAGATCATGGTCATGATCATGGGATGGAGGAACTGCCTAAAATAACTGATGAGGAGAACCTTACCATGCTTTCAAGTAGTCAGAGAAATATTAAAATCTTGAACATAAATATCCAAGGGGCTTATTTGCATGTCATGACTGATATGATTCAATCTCTTGGAGTGATGATTGCCGGAGCCGTAATATGGGCGGAACCAGAGTGGTTTATGGTTGATCTTTTATGTACTCTCATATTCTCCATTTTATCCTTAAGTACCACACTGCCCATGGTTAGGAATATTTGTGGCATTCTGATGGAGAGGACACCCAGTGAGATCAATATCATTCAGCTGGAAAATGACATTAGAAGTATCAAGGGAGTGCAGGACGTTCATGACTTGCATGTTTGGGCCATAACAGTTGGAAAAAATTCTCTATCNTGCCATGTGGTGGCTGAGCCTGGCATCAGCCCCATTGATTTACTTGGCACGATTAATCACTATTGTGAAAAAACTTATCAAATACAACATGTAACCATACAAATTGAGTAAGGTTATANTTCTTTAACGCTCCCTTTATTTTCTCTTCATAAATTATTATTCGTGGATGTTCACAAACGTGCTTTATTCTTTTCTGTTCTGACTTTCATAGTTTAAACAACTGAAATACTGGAAAAATGCAAAGGCGTCAAGGTCCTAACTCTTNTATAAAACGCAACCATCTTGCGGTTAAACTAACAAATAATTGCTTTCCCCTTGATTGAGGAATTGAGCCACCTTACTAGTTTCGTCAGTTTATAATTAAAATTGCACTTGTATTNGTGTTTTTGCATGAGGTGCATGATTTTACCTCCAAGAGTAGCTAACGGGTTACGGGTTTATAAAAATATAGTGAAAAAATNTATTGTAAAAGGGNTGATGGATCCTATGTTCTGTCAAGCAGATCTCAAAGTAGCCTTATAACAACAACGGATTAAACAAAAAACCAGGAGCTTCTTATAATCTTACATGACCTCTCTGAAACGTCAGATTCCCATTAACCACGCTATATCATCAATATCTGTCAGTTCCAATATTACATTAATTCAAGAGGAATTATCACATCACAGANGAGATAATCGAAAGATTCTAGCAACACTATCGTTTTGAAACTTTGACAAGCTTCCTCATCGCAACTCAACGAAGTAAATCTACATGTTTCTCTCTCACTCACCCATAAAGAAGGAAGAAAAAATATAAAAGAAAGGGGCAAAAACAGAATTGGGGGAAAAAAAAAAATACTATCTGCTAGTAACGCCTTTTCATCAAATGTCACACTAAGTGGAACAGCAGCCTCTCTTTGTATTGGCGGACGCATCTGCAACATTGATGGTGGTTCCTTGGCCAGGAAGTGAGGTACCAGCAGCTGCTTCCTGAGCTGCAAGTGCTTTTTTGCTTACAATGTGATAAATCTCTGTCAATATGGTTTGGAATGCCTTCTCAATGTTGGTTGCTTCCAGTGCAGATGTCTCAAGAAACGANAGACCTTCCCTCTCCGCCAATGCTTGACCGTCATCTTCCGAAACAGCTCTAAGATGGTTCAAATCGGATTTGTTTCCAGCCATCATGATAACTATATTAGAATCTGCATGGTCCCTCAATTCACGCAGCCACCTTTGGACATTGTCAAAGGTTTGCCTCTTAGTTATGTCATATACAAGGAGAGCCCCAACAGCTCCTCTATAGTAGGCACTGGTAATGGCACGGTACCGCTCCTGACCTGCTGTGTCCCAGATCTGTGCCTTAACAGTCTTTCCCTCAACCTGTGGATGAAGAACATAGAGAAACAACCATTAGTGACACTGTAATACAAACAAGGACTCAAAAACAATCTCTGCATATCATCATATTGAAAACAACTTCAACATAACCAAAAAAAAAAATTTACTCTTAACATCCATCATATAATACTAGTTTTAAGTTTTAACACTCAAGATCAATGATAACCAAATCAGGCTTACACTTCAATAGTTCAATCAAATTTTTTCGAATGATAATATGAATTTGAGTCCTCTGCATTTGATCACATCACTTAAAGCTAAAATCATTCCTCTAAGACACCTAGTCTTACTGGATGTTCCTCAGAAGAGGATCNGAGCTATTATTTCCATAATTTTAACCTATCTATGCTTGGAACAAAANGGAAAAAAGAAATAACCATAATCAAATAATTATCTATGCAAAATTGCAAATAACTTGCAGCAAGAAAAATAACAGGACAAATATCCAGAAATCTTAAATGCAAAGGATCAGTCAGCAAAGGCACATGTTACAATTACAATTGAACGCATTCACATGAGCGATGGAAAAATCAACAGAGAAAGAGGAAGTACAACTACCTGAAGGGTTCTGGTGGCGAATTCAACTCCAATAGTAGATTTAGACTCCAAGCAGAACTCGTTTCGAGTAAACCTGGAGAGGATGTTGGATTTGCCAACGCCAGAGTCCCCGATCAAAACGATCTTGAACAGATAGTCATACTCGTGGTCCACCCTATGCGCCATAGATCTTCTCCCTTCCGATNTCTTTAACCTACCAGATCCAATCCCAAACACCACTAAATATTCATTCAGATCCAAAACTCACACCGTAAAAAGCGCACAGCGACACGNTGCCACGCGCACATCAAAACCGAAAAAAGGGAAACACACACGAAACGAAGCAACAGATCTAATAACTGAATCGGAAAGCAAAAGAACTCACCGTGAGACGGGTTGATCGGTAAGAGACAGTAATGAATTGACAAATGAATGCGTTTGGTGAAGTTTTCACTTGTTAGCTGAGCGAACTCGGGAGCATGAGACACTGTGGTAGGGAACGGTTGGCGTAACCGAACGAACCGTAGGGAATTTTAGTGGAGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGATGGAGGCTTTTTCAGAGGAGAGTGGCCGAATTGGCCAATGGGAGAAAACGGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	47461	51711	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016702.1	PF01545.16	Cation_efflux	81	402	3.10E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.360
SRR1783600	control	20.923
SRR1783602	moderate drought stress	20.462
SRR1811619	moderate drought stress	20.404

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	49.526
DRR006520	Root Summer glycyrrhizin high producing strain	49.400
DRR006521	Root Winter glycyrrhizin high producing strain	17.839
DRR006522	Root Winter glycyrrhizin high producing strain	17.695
DRR006523	Root Summer glycyrrhizin low producing strain	63.385
DRR006524	Root Summer glycyrrhizin low producing strain	61.667
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.881
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.161

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.501
SRR2868004	Drought Stress (root)	21.609
SRR2967015	Control (root)	23.109

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.583
SRR9715740	Leaf	13.883
SRR9715741	Leaf	16.298
SRR9715739	Root	25.810
SRR9715742	Root	39.621
SRR9715743	Root	36.813

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	87.093
SRR8749028	MeJA induced 9h	40.795
SRR8749029	MeJA induced 9h	86.037
SRR8749030	Uninduced	86.979
SRR8749031	Uninduced	38.681
SRR8749032	Uninduced	45.974

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.605
SRR8400027	Control - Root	25.254