Gene detail

Gene detail information of Glyur000359s00016701

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07410.1	1.00E-107	RAB GTPase homolog A2B
NR	XP_003537971.1	7.57E-155	PREDICTED: ras-related protein Rab11C-like [Glycine max]
COG	YP_008431664.1	1.00E-25	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|Q40193\|RB11C_LOTJA	1.00E-154	Ras-related protein Rab11C
trEMBL	tr\|I1LJX8\|I1LJX8_SOYBN	3.00E-155	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G14360.1}

Sequence

Transcript Sequence

>Glyur000359s00016701.1
ATTAAAACATTTTCAATTTTTTTNAAAAATGAACCTTATTTATTTGCCGTTCGGAGTGCTTTCTCACTCATCGATATTTCCGTTTTCTCCCATTGGCCAATTCGGCCACTCTCCTCTGAAAAAGCCTCCATCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTCCACTAAAATTCCCTACGGTTCGTTCGGTTACGCCAACCGTTCCCTACCACAGTGTCTCATGCTCCCGAGTTCGCTCAGCTAACAAGTGAAAACTTCACCAAACGCATTCATTTGTCAATTCATTACTGTCTCTTACCGATCAACCCGTCTCACGGTGAGTTCTTTTGCTTTCCGATTCAGTTATTAGATCTGTTGCTTCGTTTCGTGTGTGTTTCCCTTTTTTCGGTTTTGATGTGCGCGTGGCANCGTGTCGCTGTGCGCTTTTTACGGTGTGAGTTTTGGATCTGAATGAATATTTAGTGGTGTTTGGGATTGGATCTGGTAGGTTAAAGANATCGGAAGGGAGAAGATCTATGGCGCATAGGGTGGACCACGAGTATGACTATCTGTTCAAGATCGTTTTGATCGGGGACTCTGGCGTTGGCAAATCCAACATCCTCTCCAGGTTTACTCGAAACGAGTTCTGCTTGGAGTCTAAATCTACTATTGGAGTTGAATTCGCCACCAGAACCCTTCAGGTTGAGGGAAAGACTGTTAAGGCACAGATCTGGGACACAGCAGGTCAGGAGCGGTACCGTGCCATTACCAGTGCCTACTATAGAGGAGCTGTTGGGGCTCTCCTTGTATATGACATAACTAAGAGGCAAACCTTTGACAATGTCCAAAGGTGGCTGCGTGAATTGAGGGACCATGCAGATTCTAATATAGTTATCATGATGGCTGGAAACAAATCCGATTTGAACCATCTTAGAGCTGTTTCGGAAGATGACGGTCAAGCATTGGCGGAGAGGGAAGGTCTNTCGTTTCTTGAGACATCTGCACTGGAAGCAACCAACATTGAGAAGGCATTCCAAACCATATTGACAGAGATTTATCACATTGTAAGCAAAAAAGCACTTGCAGCTCAGGAAGCAGCTGCTGGTACCTCACTTCCTGGCCAAGGAACCACCATCAATGTTGCAGATGCGTCCGCCAATACAAAGAGAGGCTGCTGTTCCACTTAGTGTGACATTTGATGAAAAGGCGTTACTAGCAGATAGTATTTTTTTTTTTCCCCCAATTCTGTTTTTGCCCCTTTCTTTTATATTTTTTCTTCCTTCTTTATGGGTGAGTGAGAGAGAAACATGTAGATTTACTTCGTTGAGTTGCGATGAGGAAGCTTGTCAAAGTTTCAAAACGATAGTGTTGCTAGAATCTTTCGATTATCTCNTCTGTGATGTGATAATTCCTCTTGAATTAATGTAATATTGGAACTGACAGATATTGATGATATAGCGTGGTTAATGGGAATCTGACGTTTCAGAGAGGTCATGTAAGATTATAAGAAGCTCCTGGTTTTTTGTTTAATCCGTTGTTGTTATAAGGCTACTTTGAGATCTGCTTGACAGAACATAGGATCCATCANCCCTTTTACAATANATTTTTTCACTATATTTTTATAAACCCGTAACCCGTTAGCTACTCTTGGAGGTAAAATCATGCACCTCATGCAAAAACACNAATACAAGTGCAATTTTAATTATAAACTGACGAAACTAGTAAGGTGGCTCAATTCCTCAATCAAGGGGAAAGCAATTATTTGTTAGTTTAACCGCAAGATGGTTGCGTTTTATANAAGAGTTAGGACCTTGACGCCTTTGCATTTTTCCAGTATTTCAGTTGTTTAAACTATGAAAGTCAGAACAGAAAAGAATAAAGCACGTTTGTGAACATCCACGAATAATAATTTATGAAGAGAAAATAAAGGGAGCGTTAAAGAANTATAACCTTACTCAATTTGTATGGTTACATGTTGTATTTGATAAGTTTTTTCACAATAGTGATTAATCGTGCCAAGTAAATCAATGGGGCTGATGCCAGGCTCAGCCACCACATGGCANGATAGAGAATTTTTTCCAACTGTTATGGCCCAAACATGCAAGTCATGAACGTCCTGCACTCCCTTGATACTTCTAATGTCATTTTCCAGCTGAATGATATTGATCTCACTGGGTGTCCTCTCCATCAGAATGCCACAAATATTCCTAACCATGGGCAGTGTGGTACTTAAGGATAAAATGGAGAATATGAGAGTACATAAAAGATCAACCATAAACCACTCTGGTTCCGCCCATATTACGGCTCCGGCAATCATCACTCCAAGAGATTGAATCATATCAGTCATGACATGCAAATAAGCCCCTTGGATATTTATGTTCAAGATTTTAATATTTCTCTGACTACTTGAAAGCATGGTAAGGTTCTCCTCATCAGTTATTTTAGGCAGTTCCTCCATCCCATGATCATGACCATGATCTGAGTCACCACAGCATTGATGGTGCTTATGATCATGATCCGAGTCTCCAAAGCCATGGTGATGACTATCATCATGACCAAGCCATAGAACCATGATACAGTTAAGAACAAACCCAAATGCTGCAATTGCAAACATGAGCTTTCCATTCACCCTGGCATTTGGGTGAAGAAGTCTACCAACTGCTTCATATATCAAAAAACCAGATATGGCCCAAATTAACTGCACAGATAAAAGAGCACCCAAAACCTCAAGACGATTGTATCCGAAAGACTGATGCGGTGTTGCCGCCCAACCGGAAGCCCACACTGCAAAGAGGGAGATGGAGAATCCAGCAATATCAGAAAGCAAGTGTGCAGCATCACTGATGACAGCAAGGCTGTGGGATTTTATACCCCCAATAACTTCAACAACCATAACAATAGCATAGAAAACTATGAGTACAGAAAGTTTCTTTGCTGACTTTGCTGACTCTTTTGATGATGCCCCNACACTGTTTTCCTGTCTGGAAAAACGACAAACAGAATGGCAAGATGACACCCTTGTCATGGGAAGGAGATCAACTCTGTCAGAGGCAATGGGTATCTCAATTTCCTGCGTGGACCTTGCTTCCAAGATAGGAGCTTTCTCGTGTTCCATTTGCTTCAGCAAACTGAATCTTTAAAAAACAAACAAATCATTTAGAAAAGTCGTCTCCAAGGACCGTTCAAAATTATGTTCTAGAGAATTGTGAATTGTGAACAAGTTTGACAATTTCAAACTGAAGCAAGGCATGTGTAATTGACATAAAACAACAACAAAAAAAACTGGCATTTAAGCTATTGTTGTAGGTGGGTTAAGCACAAACTTGACCGCTTCAAATTGAAGAAGTGTATAATAATTAATAAACAAGCAGAGGTGGCATTAAATTCCAATTCCAAGGTTGTTGGTAAAGTAAGAAAACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	47385	51372	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016701.1	PF00071.17	Ras	14	174	1.30E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.306
SRR1783600	control	28.634
SRR1783602	moderate drought stress	28.038
SRR1811619	moderate drought stress	27.227

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	73.956
DRR006520	Root Summer glycyrrhizin high producing strain	73.358
DRR006521	Root Winter glycyrrhizin high producing strain	24.206
DRR006522	Root Winter glycyrrhizin high producing strain	23.552
DRR006523	Root Summer glycyrrhizin low producing strain	83.864
DRR006524	Root Summer glycyrrhizin low producing strain	83.394
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.365
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.447
SRR2868004	Drought Stress (root)	19.631
SRR2967015	Control (root)	17.976

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.804
SRR9715740	Leaf	12.933
SRR9715741	Leaf	12.199
SRR9715739	Root	30.635
SRR9715742	Root	33.370
SRR9715743	Root	30.618

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	59.829
SRR8749028	MeJA induced 9h	34.668
SRR8749029	MeJA induced 9h	44.129
SRR8749030	Uninduced	57.239
SRR8749031	Uninduced	21.921
SRR8749032	Uninduced	48.337

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.221
SRR8400027	Control - Root	22.091