Gene detail information of Glyur000359s00016698 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46870.1 | 5.00E-82 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004507153.1 | 7.93E-156 | PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cicer arietinum] |
| Swissprot | tr|Q9STF9|PP266_ARATH | 8.00E-112 | Pentatricopeptide repeat-containing protein At3g46870 |
| trEMBL | tr|I1LJX5|I1LJX5_SOYBN | 5.00E-150 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00359 | 38839 | 40952 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000359s00016698.1 | PF13041.1 | PPR_2 | 140 | 187 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.123 |
| SRR1783600 | control | 3.034 |
| SRR1783602 | moderate drought stress | 3.087 |
| SRR1811619 | moderate drought stress | 3.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.273 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.392 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.630 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.427 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.962 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.102 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.924 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.322 |
| SRR2868004 | Drought Stress (root) | 4.762 |
| SRR2967015 | Control (root) | 6.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.570 |
| SRR9715740 | Leaf | 2.535 |
| SRR9715741 | Leaf | 1.537 |
| SRR9715739 | Root | 4.253 |
| SRR9715742 | Root | 2.511 |
| SRR9715743 | Root | 3.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.682 |
| SRR8749028 | MeJA induced 9h | 3.850 |
| SRR8749029 | MeJA induced 9h | 5.464 |
| SRR8749030 | Uninduced | 2.093 |
| SRR8749031 | Uninduced | 1.659 |
| SRR8749032 | Uninduced | 1.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.492 |
| SRR8400027 | Control - Root | 6.627 |