Gene detail

Gene detail information of Glyur000359s00016693

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26975.1	2.00E-30	Ctr copper transporter family
NR	XP_004507149.1	3.90E-79	PREDICTED: copper transporter 2-like [Cicer arietinum]
Swissprot	tr\|Q8GWP3\|COPT6_ARATH	7.00E-38	Copper transporter 6
trEMBL	tr\|G7JDP2\|G7JDP2_MEDTR	4.00E-68	Ctr family copper transporter {ECO:0000313\|EMBL:AES88978.2}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00359	19353	19817	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0035434 copper ion transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0005375 copper ion transmembrane transporter activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000359s00016693.1	PF04145.10	Ctr	33	79	2.30E-11
Glyur000359s00016693.1	PF04145.10	Ctr	87	134	2.30E-13

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.394
SRR1783600	control	1.531
SRR1783602	moderate drought stress	2.905
SRR1811619	moderate drought stress	2.779

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.307
DRR006520	Root Summer glycyrrhizin high producing strain	2.706
DRR006521	Root Winter glycyrrhizin high producing strain	2.154
DRR006522	Root Winter glycyrrhizin high producing strain	2.001
DRR006523	Root Summer glycyrrhizin low producing strain	1.235
DRR006524	Root Summer glycyrrhizin low producing strain	1.650
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.170
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.610

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.228
SRR2868004	Drought Stress (root)	0.975
SRR2967015	Control (root)	0.798

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.656
SRR9715740	Leaf	5.346
SRR9715741	Leaf	1.596
SRR9715739	Root	1.139
SRR9715742	Root	1.689
SRR9715743	Root	1.292

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.843
SRR8749028	MeJA induced 9h	0.838
SRR8749029	MeJA induced 9h	1.094
SRR8749030	Uninduced	0.191
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.267

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.156
SRR8400027	Control - Root	2.007