Gene detail

Gene detail information of Glyur000358s00021176

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G27460.1	1.00E-121	sec23/sec24 transport family protein
NR	XP_007132444.1	4.88E-174	hypothetical protein PHAVU_011G094800g [Phaseolus vulgaris]
Swissprot	tr\|Q9M291\|SC24C_ARATH	2.00E-09	Protein transport protein Sec24-like CEF
trEMBL	tr\|V7AHT7\|V7AHT7_PHAVU	2.00E-174	Uncharacterized protein {ECO:0000313\|EMBL:ESW04438.1}

Sequence

Transcript Sequence

>Glyur000358s00021176.1
GTGGAAGATGTTAATCTTAGTGCTAAAATCTGTTTAATTAACTATGCTTATAAGTATAATGCTTTTAGAATATTTACTAATTAGATCCTAAAGTGAGTGAGGATTCAGTCATCTTATAGATGTGGATGATAATGGTAATAGCCTGGTAACGGTTATGCTTCTATATTTTTAAGCATTATTTTTCTATGCATTGATTTATTCTTAATTTTCATTTTCTTCAATTCTAATTGTCAGTGCAGGGTATTCTTGTGCTGCAATGACTCAACTGATAAAGTAATAATGCATTGTATAAGTACATACTATCAGGCCTCATATGGGCTATGGCGTGCCAAATGTGCCCTAATTGTTTAAGCCGATAGAAGAATGTCAAAGGATGGTTTCTATTAAATGTCATTGGCAGTGAGGAGGAGCTGGTGAATTTACTGAAGGATAATACTGATATGATTAAAGAGGGCATTCTTAATGTTTTAGCAAAGGCTGGTGGTACTATTCGTGAACAACTTGCAGTCACATCAAGCTCGGTAGACCTTATCTTGGACAAGCTACGTTTAGAAGGCAGTCGGAACAGGCAAATAGATATGCTGGAAGAGAAAACACATCGGCCCGCAGTACTTCAGTCTCTGGGGTGTATAGCGCAAACTGCAATGCTTGTCTTTGAAACTAGAGATAGTGATATTGAAGAATTTATAACAAACAAGATTCTGAAAAGTGAGAGCAAAGAAGAAGATCACACTAGAACATCTTGGGATGATAAAAGTGATCTTTGTATGCTGAAGGTTGGTAGGAAGAATAGTCTCTTCTGTATTTATTTCGTGACTTCTGGGTTCCACTGCAGCTTCAGAGGAGTTTCTGTAACTCATAAAAGTGCATTGCTGGCAGCTTTGGAAGCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACCTTCAACCACAAACTAGGATTGTACGATGTTCAAGGTCCAATACCTGTTGTGAAAGATGTTTTCATCCCTCCTGATGCAGAGGGAACCTTACCAATTGAGCTTGAAGATGTCATGCCTTTGTTACAGTTTCTGGCTCCCGTGGAAACTTCTAAGGACCGTATTGCATCTACACTTGAAACACTTAGACCAACAACTTCATGGGAGAGAACCACAACAGCAGGTCAAGGACTGGATGGAGTACTGATAGGTGGGGCGGTTTTGGGGTGGCAATGGAAGCCCTTTGCGAGTCTTTGCTTTCTGAAACAATTGGACACAAGACGATATGGTGAGCAATATGCAAGCAAAGGAGAGGATGCAGATCGTGCTTTACTCCTGGAGCAGACACCAATTCATAAAGACCTGGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATTTTTGCCGTAACAAATGAGTATACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAGAGTGGGGGCTCCTTATTTTTGTATACAATGACTGAGGATTCAACTTTGCCTCAGGACATGTATCGAATGCTTAGTAGGCCATATGCTTTTGGTTGTGTCCTGCGATTAAGAACCTCAACTGAATTTAAACCTGGCAATTCTTATGGCCACTTCTTTCCAGACCCGCAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACGTATGCTTATGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGTTTAAAGATTATGCCTTTTGAAAAAGGCTTGGTTAGTCCAATGTTGTTTCACAATGTTCCTACACTTCAGATTGCATTTCAGTACTCTGTTGTAGTTCCTCCTCAGGAACTTCCCAATTCAGCTGGGGTCTCTACAAGCAGGCAGTTGCGCTTAATACTGTCGATGTTACTGCAAAGAGATGAAGGTCCCAAGTGAGAAGTAACTACTGACAAAGAGAAGGAAGTTATATCTACTATCACTTCTATCTTTTGGAATATCAAGCTTTCTAACGATATGGTTGACACATCAAAGACACAGAATTCTTATGCAATATGCGACCTTGGGTTAGCAATAACAAAACGATTAGTGCAGAAGGATGTTGATTTGCAAGAATTGTCCCATCTGGTGTCTCTTCCTCCAATTCTATACAAAGCATCCGAGTAGAAGGAAGGAGATGACACTATTGGGTAAGTGACGTGAAAAGCTGGTTGGCTGATGACACTGCCTTGACTCACTTTGAATCTCTTGAACTAAAAGTGGTTCAATCCCAATTAGCTGAAGCTTCAAAGGACAATGAAGAAGACGGAAACCAAATACGTCTGGGAAAGATGTTAAAGCATATCAAATCCCAGGGAATCAGTTTCAGGAGAAAACTCCCCTGGAGACAAATCACTGTTGGACACAGAAATTAACTTTGATACAGATAGCAAAACCATGGAGAGAATAATGGTCAAAGACTTGTTAGTGTCCTCATTAAAACAAAAAGGTTAAGGGCTCTGAAAGCTTTCATGACGATGAGTTGAATAAACATGATGAACATGACATGAAGAGTCCTGATGACTTAGAACAAAGTGATAAGACTGCATATAATAATTCCAAGCCATCCATGCAGTCTACTAAAAAGTGGAAAAAAAAAAGTATTGCAGGATTGACTAAGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00358	169290	178475	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006888 ER to Golgi vesicle-mediated transport

cellular_component
GO:0030127 COPII vesicle coat

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000358s00021176.1	PF04811.10	Sec23_trunk	138	350	5.30E-14
Glyur000358s00021176.2	PF04811.10	Sec23_trunk	138	350	7.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.249
SRR1783600	control	2.167
SRR1783602	moderate drought stress	2.410
SRR1811619	moderate drought stress	2.290

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.681
DRR006520	Root Summer glycyrrhizin high producing strain	13.209
DRR006521	Root Winter glycyrrhizin high producing strain	19.536
DRR006522	Root Winter glycyrrhizin high producing strain	13.350
DRR006523	Root Summer glycyrrhizin low producing strain	2.247
DRR006524	Root Summer glycyrrhizin low producing strain	2.251
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.113
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.155

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.116
SRR2868004	Drought Stress (root)	4.891
SRR2967015	Control (root)	4.254

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.217
SRR9715740	Leaf	0.215
SRR9715741	Leaf	0.642
SRR9715739	Root	0.000
SRR9715742	Root	2.315
SRR9715743	Root	1.081

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.972
SRR8749028	MeJA induced 9h	29.108
SRR8749029	MeJA induced 9h	10.150
SRR8749030	Uninduced	13.076
SRR8749031	Uninduced	5.931
SRR8749032	Uninduced	4.856

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.546
SRR8400027	Control - Root	5.434