Gene detail information of Glyur000358s00021175 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02530.1 | 4.00E-10 | TCP-1/cpn60 chaperonin family protein |
| NR | EPS67177.1 | 8.37E-12 | hypothetical protein M569_07600, partial [Genlisea aurea] |
| Swissprot | tr|Q9M888|TCPZA_ARATH | 1.00E-11 | T-complex protein 1 subunit zeta 1 {ECO:0000303|PubMed:11599560} |
| trEMBL | tr|S8E4D3|S8E4D3_9LAMI | 3.00E-12 | Uncharacterized protein {ECO:0000313|EMBL:EPS67177.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00358 | 166536 | 168488 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.030 |
| SRR1783600 | control | 1.100 |
| SRR1783602 | moderate drought stress | 2.128 |
| SRR1811619 | moderate drought stress | 1.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.542 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.394 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.345 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.572 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.515 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.336 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.384 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.897 |
| SRR2868004 | Drought Stress (root) | 4.696 |
| SRR2967015 | Control (root) | 4.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.118 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.119 |
| SRR9715739 | Root | 0.068 |
| SRR9715742 | Root | 2.725 |
| SRR9715743 | Root | 0.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.623 |
| SRR8749028 | MeJA induced 9h | 22.254 |
| SRR8749029 | MeJA induced 9h | 1.755 |
| SRR8749030 | Uninduced | 3.184 |
| SRR8749031 | Uninduced | 1.532 |
| SRR8749032 | Uninduced | 0.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.244 |
| SRR8400027 | Control - Root | 8.112 |