Gene detail

Gene detail information of Glyur000358s00021174

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71870.1	0	MATE efflux family protein
NR	XP_007151906.1	0	hypothetical protein PHAVU_004G085700g [Phaseolus vulgaris]
COG	YP_003264696.1	3.00E-40	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8RWF5\|MATE9_ARATH	2.00E-67	MATE efflux family protein 9
trEMBL	tr\|V7C3N4\|V7C3N4_PHAVU	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000358s00021174.1
ATATCAACAAAGAAAAGAATGGGAGACAATAATAAAGACCAGGATTTCTTCTCCAACAAATTCCCAACAACATCTCAGCAGGTGGTGGAAGAGCTGAAGGAACTGTGGGGCATGGCTTTACCAATAACAGCAATGAACTGTTTGGTTTTTGTGAGAGCAGTTGTTTCTGTTCTCTTCCTAGGTAGGCTAGGTAGCCTACAGCTAGCAGGTGGTGCACTCTCCATAGGCTTCACCAACATAACAGGTTACTCAGTCCTTGTGGGTCTTGCATCAGGTCTTGAACCTGTTTGTAGCCAAGCCTATGGTAGCAAAAACTGGGACCTACTATCCCTTTCCCTACAAAGAATGATCCTCATACTCCTCATGGCAACACTACCCATAAGCCTTCTTTGGCTGAACCTTGAAGGGATCATGCTTTACATGGGTCAGGACAGCACCATAACACAGGTGGCAGCAACTTATTGTTTTTACTCTCTCCCTGACCTTTTAACAAACACCTTGTTGCAACCATTGAGGGTGTTCCTTAGGTCTCAAAAGGTGACAAAACCCATGATGTATTGCTCCCTTGTGGCTGTGGTTTTCCATGTGCCATTGAACTACCTTTTGGTGGTTGTTATGGAACTTGGGGTGCCAGGTGTGGCTATGGCTTCTGTGCTGACAAATTTGAACATGGTGGTGCTTATGGCTGGGTATGTGTGCCTTTGTAGGAAGAAGGAGATGGTGCTGAGGTGGGGTTGGGGTGTTGGTTTTGGTGGTGGTGTTGGTGTGTGTGGTGGGTTGGGACAGTTGATGGGGTTGGCTGTGCCTAGTTGCCTTATGATATGCTTGGAGTGGTGGTGGTATGAGATTGTTACTGTGATGGCTGGTTATTTGCCAAATCCAACTTTGGCTGTGGCAGCTACTGGGATTTTGATTCAGACAACTAGCATGATGTACACTGTCCCCATGGCACTTGCAGGGTGTGTTTCTGCCAGGGTAGGGAATGAGCTTGGAGCTGGTAAACCATACAAGGCAAAGCTAGCAGCAATGGTTGCCTTAGGATGTGCTTTTGTGATGGGCTTCATCAATGTGACATGGACTGTGATCCTTGGACAGAGGTGGGCCGGGCTTTTCACCAAGGATGAGTCCGTCAAGGCCTTGGTTGCATCAGTCATGCCAATCATGGGCCTATGTGAGCTTGGAAACTGCCCACAAACCACAGGCTGTGGCATCCTCCGTGGCACGGCACGGCCAGTCATAGGGGCACACATCAACCTGGGCTCATTTTACTTCGTGGGCACCCCGGTTGCCGTGGGCCTGGCCTTTTGGTTCAAGGTTGGGTTTAGTGGGCTTTGGTTTGGGCTTCTCTCTGCACAGGTGGCATGTGCTTTGTCAATCCTCTATGTTGTCATGATGAAGACAGATTGGGAAGCTGAAGCATTGAAGGCTGAGAAGCTCACAGGTGTGGAAATGGAGAGTTGCAATGGAAATAGGAATAATAATAATAATAAAGCCAATGAGGAATGCAAGGGATTGTTGCTAATGAATGGAAATGGGAACAAAAATGACATTTGCTAAAAAGGCACAACCAATACCACCCCAGCACACAGAATGATACTAATGATGAGATTGGGATTCTGTTTGTTGGCAAAGATCACATATTTGTTGCCTATGGATTGGAGGTGGAGGGTTGTGAGTGGTACCTGTAATTGTGGCTAACAGGTATGGGTGATGGGTTGCTTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00358	150649	154421	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000358s00021174.1	PF01554.13	MatE	35	195	1.00E-30
Glyur000358s00021174.1	PF01554.13	MatE	263	424	2.90E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.243
SRR1783600	control	7.143
SRR1783602	moderate drought stress	6.706
SRR1811619	moderate drought stress	6.504

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.178
DRR006520	Root Summer glycyrrhizin high producing strain	6.005
DRR006521	Root Winter glycyrrhizin high producing strain	0.193
DRR006522	Root Winter glycyrrhizin high producing strain	0.189
DRR006523	Root Summer glycyrrhizin low producing strain	6.915
DRR006524	Root Summer glycyrrhizin low producing strain	7.100
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.529
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.550

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.887
SRR2868004	Drought Stress (root)	24.416
SRR2967015	Control (root)	19.280

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.363
SRR9715740	Leaf	0.564
SRR9715741	Leaf	0.413
SRR9715739	Root	7.855
SRR9715742	Root	12.035
SRR9715743	Root	11.980

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.854
SRR8749028	MeJA induced 9h	0.083
SRR8749029	MeJA induced 9h	0.501
SRR8749030	Uninduced	0.074
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.228
SRR8400027	Control - Root	20.102