Gene detail

Gene detail information of Glyur000358s00021169

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15740.1	4.00E-178	Leucine-rich repeat family protein
NR	XP_004506962.1	0	PREDICTED: internalin-A-like isoform X1 [Cicer arietinum]
COG	YP_008925.1	6.00E-51	hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25]
Swissprot	tr\|Q708Y0\|EBF2_ARATH	8.00E-12	EIN3-binding F-box protein 2
trEMBL	tr\|I3SDZ9\|I3SDZ9_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK38491.1}

Sequence

Transcript Sequence

>Glyur000358s00021169.1
CTCTTCTATCGAAANAAACAAATTTGCCACGTGTCTTCCGATGGTTGGTTCGGACGTAGGCTCGGAAACGAGCCACGTAGCGTTCGCGGTTTCTCGTTCCNCCACCCAACCCACTTTTTCCCTTCTCTTCTTCTTATTTTCACTCACTCTCATGTTTTTCAGTTTCCACCATCACCACCTGCAACAACAATAGCCATTCGGTGATTAATCGCTTCGCTTCTNCTTCTTCTTCTCCTACTTCTCTCTACCACTCGATCATGTCAGGGGTGAAGTTGGTTTCATGTATTCATTTTTTGTCATTGAATGGGCTAAGATAGTGTTCTGGCGCGATTTTATTGACAAATATTGATTACATTACGTCACGAGAATATTTCCTTGATGGGTGGAGCGTGTTCTAGGAAGCAAGAGCTGGATAATGAAGATAGTCTTAGTAGGGGATTTTCACGGAGATATTGCAAATGTGGGAGTTTGAAATGGTGGACATCCTCGTTTTCTTATCCATCTGTAGATTTACACGTACGAAAAGGAGAATGTCCATCACTGCTGGACTTGTGCGTCCAGAAAATAAATGAGATTCTATATGTTTTTGATCTAGTCACTGCAATCTTTATTCAACAGGATATTGATAAACATAACACATTTTCGATGCTGCCACGTGATATAAGTCAGCAAATTTTTAATAGTTTGGTTTACTCCCGACGTCTAACTGGTGCTTCTCTTGAAGCTTTTCGAGACTGTGCTCTCCAGGATCTATACTTGGGAGAATATGCTGGTGTTAATGATTCTTGGATGGATGTGATCTCATCTCAGGGTTCATCTTTACTTTCTGTAGATCTTTCTGGGTCTGATGTCACTGATTTTGGGCTGACTTACCTTAAAGATTGTCAAAGTCTTATTTCTTTAAATCTAAATTACTGTGACCAAATTTCAGATCATGGACTGGAGTGTATCAGCGGTCTGTCAAACTTGACAAGTTTGAGTTTTAGAAGAAATGATTCAATATCTTCTCAAGGAATGAGTGCCTTTTCTGGTCTTGTTAACTTGGTCAAGTTGGATTTGGAGAGATGTCCTGGGATACATGGAGGCCTTGTTCATCTTCAAGGTTTAACCAAGTTGGAATCTCTCAATATAAAGTGGTGTAATTGCATAACAGATTCTGATATGAAGCCTCTATCAGAGCTTGCAAGTTTGAGAAGTCTAGAGATTTCTTGCAGTAAAGTCACTGATTTCGGTGTCAGTTTTCTTAAAGGATTACGAAAGCTTGCTTTGTTAAACTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGAGCTCCCTGCACTGTCAAACTTGAATCTTAATAGATGCAACCTTTCTGACGATGGGTGTGAAAAGTTTTCAAGACTGGGAAATTTGAAAGTATTAAACTTGGGCTTTAATGACATAGGAGATGCATGTTTAGCTCACTTGAAAGGATTGACTAAGTTGGAGAGCTTGAACCTTGATTCATGTAAGATCGGTGATGAAGGATTGGTGAACTTGGCAGGCCATAAGCAATTGATCTGCTTGGAACTGTCTGATACGGAAGTTGGAAACAATGGGCTAGAACATTTATCAGGATTGTCTAGTCTGGAGAAAATAAATCTGTCATTCACGGTTGTTAGTGATAGTGGTTTAAGGAAATTGTGTGGACTCTCGGCTCTGAAGTCACTTAATTTGGATGCTTACCAAATTACTGATGCTGGACTGGCAACCCTTACAAGTTTGACTGGCCTCACTGACCTTGATTTGTTTGGCGCACGAATTACAGACGTTGGGACAAATTATTTGAAAAAATTCAAGCATCTGAGGTCCCTGGAAATATGCGGTGGTGGATTGACTGATGTTGGTGTGAAAAATATCAAAGAGCTTTCTTCTCTAATGTGCTTAAATTTATCACAAAACAGCAACCTTACGGACAAAACGCTGGAGTTAATTTCTGGGCTCACTGGGTTGGTCTCTTTGAATCTTTCAAGTTCTCGCATCACCAATTATGGACTGCAGCATTTGAAAACACTGAAGAACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACAGCAAATGACATTAAGAAACTTAAATCAACACACCTTCCGAATCTGGTAAGCTTTCGGCCCGAGTAGTTAAAGTTAGGGCCGGATTATAATCTGTGTATATATATGAATCGTACCGACATGTTAGAGAAAAGCATGGAAAGACAACCTCAAAATGTACATAGGGTAATGGCTTTAGGGAAGGTATGAATTGCCTCCTTCTGCTGTGAAGGGTTTTTTCTTATTGTAAAGAGTGAATCACCAAAATCATCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00358	112933	128829	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000358s00021169.1	PF13516.1	LRR_6	169	192	0.095
Glyur000358s00021169.1	PF13516.1	LRR_6	194	217	0.13
Glyur000358s00021169.1	PF13516.1	LRR_6	316	335	0.026
Glyur000358s00021169.1	PF12799.2	LRR_4	342	379	4.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.926
SRR1783600	control	8.983
SRR1783602	moderate drought stress	15.041
SRR1811619	moderate drought stress	14.858

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.522
DRR006520	Root Summer glycyrrhizin high producing strain	20.156
DRR006521	Root Winter glycyrrhizin high producing strain	53.600
DRR006522	Root Winter glycyrrhizin high producing strain	52.518
DRR006523	Root Summer glycyrrhizin low producing strain	30.819
DRR006524	Root Summer glycyrrhizin low producing strain	31.228
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.613
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.514

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.546
SRR2868004	Drought Stress (root)	55.365
SRR2967015	Control (root)	74.782

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.088
SRR9715740	Leaf	23.914
SRR9715741	Leaf	24.889
SRR9715739	Root	9.585
SRR9715742	Root	18.037
SRR9715743	Root	13.544

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.734
SRR8749028	MeJA induced 9h	48.417
SRR8749029	MeJA induced 9h	22.501
SRR8749030	Uninduced	26.123
SRR8749031	Uninduced	27.952
SRR8749032	Uninduced	27.222

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.121
SRR8400027	Control - Root	36.338