Gene detail

Gene detail information of Glyur000358s00021167

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80490.2	0	TOPLESS-related 1
NR	XP_006585625.1	0	PREDICTED: protein TOPLESS-like isoform X1 [Glycine max]
COG	YP_001275252.1	2.00E-20	WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q0WV90\|TPR1_ARATH	0	Topless-related protein 1
trEMBL	tr\|I1KVH4\|I1KVH4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G22910.7}

Sequence

Transcript Sequence

>Glyur000358s00021167.1
TCCATTTCTGTGAGGCGAGAGAAAGTGTACGAATCGGAAGAGAGAGAAAGCTTTGGTATTTTTGGGTGACTTTGTTGTGGNGGAGGTTCCATATTCGGAGTCTTTTGTTGGTGTTGTTGCTCTGTGTGTGATGTCTGTGAAGTTCACTGTTGCTCATTCTAGTGCGTATCTAATTGAAGACGAGGCGGTTACGATGTCGTCTCTCAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTAGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTTGAGCAGGAGTCTGGATTTTTCTTTAACATGAAGTATTTTGAGGATGAAGTGCACAATGGGAATTGGGATGAGGTTGAAAAGTACCTATCTGGTTTCACAAAAGTAGATGACAATAGGTATTCTATGAAGATATTCTTTGAGATAAGGAAGCAGAAGTATCTGGAAGCATTAGATAAGCATGACCGGGCCAAGGCTGTGGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAATGAAGAACTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAACGAACAGTTGTCTAAATATGGTGATACAAAGTCTGCACGCGCAATCATGTTGGTTGAGCTTAAAAAGCTCATTGAAGCAAATCCCTTGTTTCGTGACAAGTTGCAATTTCCCAACCTTAAAAACTCGAGGTTGCGGACTCTCATCAATCAAAGCTTGAATTGGCAGCATCAACTTTGCAAGAATCCACGTCCAAATCCCGATATAAAAACTCTTTTTGTGGATCACTCCTGTGGACAACCAAATGGTGCACGAGCTCCTTCGCCTGCTAACAATCCGCTACTAGGATCCTTACCAAAGGCTGGAGGGTTTCCTCCTCTTGGTGCTCATGGGCCTTTTCAACCTACTCCGGCACCAGTGCCCACGCCACTGGCTGGTTGGATGTCAAATCCTACCACTGTAGCGCATGCGGCAGTTTCTGGAGGAGGAGCTATGGGTCTTGGCACTCCGTCGATGCCCCCTGCTTTGAAGCATCCAAGGACCCCACCTACTAATCCTTCTGTTGACTATCCATCAGGAGACTCAGATCATGTTGCTAAGAGAACAAGGCCAATGGGAATTACAGATGAGGTAAATCTACCTGTCAATGTGTTGTCGTCAGCGACGTTCCCAGGTCATGGCCATGGTCAGGCTTTTAATGCACCTGATGACTTACCGAAGACTGTCATGCGAACTCTGAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCACTTCTTCTTGTTGGTACGAATGTTGGGGACATTTCCTTGTGGGAGGTGGGTTCTAGGGAGCGGTTGGTCTCAAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCAGGTGTTTCCGTTAACCGTGTGATTTGGAGTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCGAGGCACATTGTTCAGATATACTCNTACCATGGTGGGGATGAAGTACGACAGCACCTAGAGATTGATGCTCATGTTGGTGGAGTAAATGACCTAGCATTTTCCCACCCAAATAAGCAACTGTGTGTGATAACCTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTTCGGGAGCAAAGCAGTATACTTTTGAAGGCCATGAGGCTCCAGTTTATTCTGTCTGCCCGCATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGACGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGTCCTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGAACAAGCAAAGAAGGGGAATCCTCTATTGTGGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGATTTCGTAAACGATCTTTGGGTGTTGTGCAATTTGATACTACTAAAAATCGATTTTTGGCTGCCGGTGATGATTTCTCCATTAAATTCTGGGATATGGACAATGTTCAGCTTTTGACAACTGTTGATGCTGATGGGGGTCTCCCTGCAAGCCCACGTATTCGTTTCAACAAGGATGGAACTCTTTTAGCCGTCTCTGCCAATGATAATGGGATTAAAATTTTAGCCAATGGAGATGGTATTCGTTTATTGCGTACATTAGAGAATTCTTTATATGACACATCAAGAGCATCGGAAGCCTTGGCAAAGCCTACGATAAATCCAATTTCTGCCGCCGCCGCCGCCGCTGCTGCAGCAAGTAGTGCTGCACTTGCAGAGAGGGCCTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATGCTCGAAACATGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAGTCAAAGATATGGAAGCTCACTGAAATCAATGAACCATCTCAATGTAGATCCTTGAAGCTACCGGAGAATGTAAGAGTAAACAAGATATCAAGGTTGATATATACAAATTCAGGTAATGCCATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGCGAAATGACCGTAACTCATCTGGCAAGGCCACTGCCAGCATGCAACCTCAGTTGTGGCAGCCGTCAAGTGGCATCTTGATGACTAATGACATCGTCGATAGCAATCCCGAGGATGCCGTGCCCTGCTTTGCTCTGTCGAAAAATGATTCATATGTAATGTCTGCATCAGGAGGGAAGATATCCCTGTTCAATATGATGACTTTTAAGACAATGACAACTTTCATGCCTCCACCACCTGCAGCTACCTTTCTTGCTTTCCATCCTCAGGATAACAATATCATTGCCATAGGCATGGATGATTCTTCCATTCAGATATATAACGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGTCATACAAAAAGAATAACTGGTCTTGCTTTCTCTCATGTATTGAATGTTCTAGTTTCATCTGGGGCGGATGCTCAGATTTGTGTGTGGAATACCGATGGATGGGAAAAGCAGAAGACTAGATTCTTGCAGCTTCCTCCTGGGAGGACTCCATCGGCACAGTCAGATACACGTGTACAGTTTCATCAGGATCAGATACAGTTCTTGGTTGTACACGAAACTCAGCTTGCCATTTATGAAGCAACGAAACTAGAATGTCTAAAGCAGTGGTTCCCCCGAGATTCTTCTGCACCAATATCCCATGCAACCTTCTCATGTGATAGCCAGCTGATATACGCAAGCTTTTTAGACGCAACAGTCTGTGTATTTAATGCTTCAAATCTCAGATTGCGTTGTCGTATCAATCCTTCTGCTTATCTTCCTGCAAGTGTCAGCAGCTCCAACGTACAACCGCTTGTAATAGCAGCACATCCACAAGAACCAAACCAGTTTGCCGTAGGACTGTCAGATGGGGGAGTTCATGTCTTTGAGCCCCTCGAGTCCGAAGGCAAGTGGGGTGTGCCACCTCCGATTGAGAACGGATCAGCAAGCAATGTGGCAGCTACTTCAGTTGGACCTTCTTCAGATCAAGCTCAAAGATGATGTGATGATGAGTCCATGTCAGCAAAAAGACAAGTTTCTTTTACATTACTTGGCTTGCTGGCCACTTCCAAGAACACACTAAATTTGTACTTGAGTTATTAATGCAGGGGGCACTCTCTCCAAATCAGTTGATCCAATGCTCCTCTAGATTCTGTAGTAATGTTGTCTGGGCTGTGTGAGCACAATCATGTCATGTCAAAGCTTTGGAGCCACTCATTTGGTTGAAACCAAAAAAACAACATTGTGATGATTTGCCAATAGATGTGAAAAATTCTTTTTTATTCANTTATTTAAGTTTAATGCTTCAGATGTAGAAGTTTCTTTTGAGTACTTTCAAGCTGCTTTCATTAGATTGGTTGGTCCTAACTTATTGCCTTTTGTTAGTTCCACTTCAGTCTTGCATGTAAGATACTACTAGGCTAATCTTTGTCTTCCATCTTCCTAATTGTTCCTATACTATCTATATAAATATAAGATGT

Protein Sequence

>Glyur000358s00021167.1
MSVKFTVAHSSAYLIEDEAVTMSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAMGLGTPSMPPALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGITDEVNLPVNVLSSATFPGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDISLWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMSYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANDNGIKILANGDGIRLLRTLENSLYDTSRASEALAKPTINPISAAAAAAAAASSAALAERASSVVAIAGMNGDARNMGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASMQPQLWQPSSGILMTNDIVDSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCRINPSAYLPASVSSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGPSSDQAQR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00358	90776	99253	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000358s00021167.1	PF00400.27	WD40	479	513	3.70E-07
Glyur000358s00021167.1	PF00400.27	WD40	520	556	0.0013
Glyur000358s00021167.1	PF00400.27	WD40	940	977	7.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	87.036
SRR1783600	control	87.335
SRR1783602	moderate drought stress	180.540
SRR1811619	moderate drought stress	178.755

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.414
DRR006520	Root Summer glycyrrhizin high producing strain	56.841
DRR006521	Root Winter glycyrrhizin high producing strain	46.136
DRR006522	Root Winter glycyrrhizin high producing strain	44.509
DRR006523	Root Summer glycyrrhizin low producing strain	56.954
DRR006524	Root Summer glycyrrhizin low producing strain	57.125
DRR006525	Leaf Summer glycyrrhizin high producing strain	32.113
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.896

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	127.825
SRR2868004	Drought Stress (root)	151.439
SRR2967015	Control (root)	162.422

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.404
SRR9715740	Leaf	83.135
SRR9715741	Leaf	80.188
SRR9715739	Root	35.933
SRR9715742	Root	140.932
SRR9715743	Root	122.579

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.772
SRR8749028	MeJA induced 9h	64.171
SRR8749029	MeJA induced 9h	30.551
SRR8749030	Uninduced	33.208
SRR8749031	Uninduced	23.245
SRR8749032	Uninduced	30.173

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	139.005
SRR8400027	Control - Root	141.100