Gene detail information of Glyur000358s00021164 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15780.1 | 7.00E-118 | |
| NR | XP_003533074.1 | 0 | PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Glycine max] |
| Swissprot | tr|F4I171|MD15A_ARATH | 9.00E-171 | Mediator of RNA polymerase II transcription subunit 15a |
| trEMBL | tr|K7L7Z4|K7L7Z4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G22950.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00358 | 26019 | 38087 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.865 |
| SRR1783600 | control | 15.102 |
| SRR1783602 | moderate drought stress | 27.846 |
| SRR1811619 | moderate drought stress | 27.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.345 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.268 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.002 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.347 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.742 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.720 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.187 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.507 |
| SRR2868004 | Drought Stress (root) | 20.709 |
| SRR2967015 | Control (root) | 25.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.815 |
| SRR9715740 | Leaf | 9.494 |
| SRR9715741 | Leaf | 9.418 |
| SRR9715739 | Root | 2.257 |
| SRR9715742 | Root | 12.515 |
| SRR9715743 | Root | 9.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.876 |
| SRR8749028 | MeJA induced 9h | 42.406 |
| SRR8749029 | MeJA induced 9h | 16.923 |
| SRR8749030 | Uninduced | 15.891 |
| SRR8749031 | Uninduced | 14.395 |
| SRR8749032 | Uninduced | 9.338 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.776 |
| SRR8400027 | Control - Root | 10.918 |