Gene detail

Gene detail information of Glyur000357s00018138.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29080.1	1.00E-74	phytochrome-associated protein 2
NR	XP_003534212.1	1.54E-164	PREDICTED: auxin-responsive protein IAA27 [Glycine max]
Swissprot	tr\|Q9ZSY8\|IAA27_ARATH	5.00E-98	Auxin-responsive protein IAA27
trEMBL	tr\|I1L4K7\|I1L4K7_SOYBN	6.00E-165	Auxin-induced protein {ECO:0000256\|RuleBase:RU004549}

Sequence

Transcript Sequence

>Glyur000357s00018138.1
AAACGAACAGAACACAAACCTCAGAGAAGCTTCTCTTCATCAAAACTTCAATACATTTTTTGTTTTTCCACTGTTAAATCCTGATTCTTATATCTCTCTCTCAGTTTCTGTTTTTTCTCTCTGTCTCTCATCATTGCTTTTTACATGTTCTCTTTAATACTGTAGTAGTTGTGTGAACTGAAGTTTGATGTCTGTGCCATTAGAGCAAGGAGGCTATGTAGGCTTACCTAAGGTTCCTACAATGGAAAGTTCTTCTGAAACCTTTTCTCAAAGGGGTAGTAGCAGTAGCAGTGGCTTGAACCTCAAGGCTACTGAGTTGAGACTTGGCTTGCCTGGTTCTGAGTCGCCAGAGAGAGAAGGTGTTGTTGGTGTTGGTGTTGGTGTTGAGGAAAAAAATGTGTACCCTTTAGGCATGCTCAAGAGTTTGGTGTCAGGGGCAAAAAGGGGTTTTTCAGATGCAATTGATGGTGGTTGTTCTGGTGGGAAGTGGCTTCTTTCTTCTGGGAATGGTGGTTCTGAGGTGGGTCTGTGTAAAGATGGAAGCTTGTTCTCTCCTAGGGGTGTTGTTGGTGCTGCTGGCAAGGGTCTTCCTGGTACCGCTGACTGTACCAACATCCAACAAGCATCTGTTGTGAAAGATAAAGTTCCTCAGTCTCCAAATCCATTGAATGAGAAGAAGAAGCCTCAGATATCTGCTCCTGCTGCAAAGGAACAGGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAAAAGAATGATGATGATAATGATGCAGAAGCCAAGTCTGGATGTCTTTATGTAAAAGTGAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGGCACCTACAGGGAACTATCTTCAGCACTAGAAAAAATGTTTAGTTGTTTCACAATCAGTCAATGTGGCTCTCATGGAGTTTCTGGTAGAGATAATTTGAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTACTCACCTATGAAGACAAGGANGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGACACTTGCAAGAGGTTAAGGATAATGAAAAGTTCTGAAGCAATTGGACTAGGTNAGGCTTACACCACCAAGAGCCATGGAAAAGTGCAAAAGCCGCAACTAGCAAAGTGCTATATCCCATACAGAAAGATGAGTAATGCTTTTGATTCACATCATACATGAGTCCAGAGGCATGCAGGGGCATGACACAATCTGGGGCTTCTCTTCCTTCCTTATGTATAATCCTTACATATGGGATCTGAGTGTCCTAAATGTTTTAATAGGCAAGATATGCTTGTTGTAGTTATTTAAGGTTTCATAGGTTTGTTTCCCCTCACTTCTCTTTAATCACTATCACAGTGGACTTCACCATAAGGCTAAAGCTATGTTAGTATGTAAGCTTTGTTCTTCTTTTGCAACTTTTGTGCTCTCTCCCCCTTCGCTCTGAAAATTAATGTTGTACTTGTTAGTGGCATTTTGATTTTTATGACTAGGAAAAGAAAATAACATCATACCTTGTTTCGTTTTATGAGAGAATTTTATTGTGTTTCACACTTTTACCATTAATCCAAACATACCCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00357	158929	163365	+

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA
EAR motif-containing Proteins	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000357s00018138.1	PF02309.11	AUX_IAA	37	319	2.80E-80

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.874
SRR1783600	control	24.863
SRR1783602	moderate drought stress	42.201
SRR1811619	moderate drought stress	40.290

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	116.476
DRR006520	Root Summer glycyrrhizin high producing strain	114.638
DRR006521	Root Winter glycyrrhizin high producing strain	0.468
DRR006522	Root Winter glycyrrhizin high producing strain	0.462
DRR006523	Root Summer glycyrrhizin low producing strain	100.354
DRR006524	Root Summer glycyrrhizin low producing strain	98.020
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.436
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.177

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.070
SRR2868004	Drought Stress (root)	64.478
SRR2967015	Control (root)	71.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.087
SRR9715740	Leaf	15.719
SRR9715741	Leaf	29.083
SRR9715739	Root	46.530
SRR9715742	Root	119.530
SRR9715743	Root	103.361

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.221
SRR8749028	MeJA induced 9h	0.089
SRR8749029	MeJA induced 9h	0.590
SRR8749030	Uninduced	0.056
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	85.063
SRR8400027	Control - Root	96.734