Gene detail

Gene detail information of Glyur000357s00018136

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29100.1	2.00E-63	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	AFK35850.1	1.54E-134	unknown [Medicago truncatula]
Swissprot	tr\|Q8S3D1\|BH068_ARATH	9.00E-82	Transcription factor bHLH68
trEMBL	tr\|I3S6F8\|I3S6F8_MEDTR	6.00E-135	Uncharacterized protein {ECO:0000313\|EMBL:AFK35850.1}

Sequence

Transcript Sequence

>Glyur000357s00018136.1
ATGGCTGGGCACCCTAACTGGTGGAACATCAATATCAATAACATGCCTCCACAAGCTCCTCCTCCTTTCTTGTCTACTCCTAATTCTTCTAACTTTCTCACCCCTAATTACAATAATACCCCAACTTCTTCTTCTCTTCCCTTTATTCCTTCTTGGCATGATAATCAAGAGCTTCCTGAGGGTGGACTGGTGGCAGAGGAATCAGATAAGGGTGGTATGGGGCAATTTCATCATGATCCTCANAATCAAATGATAATTAGTCAGGCTCCAAATGCTTCTTCTCTTGTTGATGTGAAACAAGAGAGCCAAGGAGGAAACAGCTATGTATATGCAGGGCATAATGGAAATGAAGAGCTTCATTCATCAGCAGCAAAGTCTTGTAATTGGTCTCCAAAATCCTGTGTGACAACTAGTTTCAGCAGCAACATGTTGGATTTCTCTAACAATAATAATAACAACAACATGGATTTGAAGCATCCACCACCAGATCAATCTTCTGAGTGCAACAGCACTGCATCTGGTGGGGCACTGAAGAAAGCCAGGGTTCAACAAGCTACAACTACTCAGTCTACTTTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACTGCACTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGTGATGCTCTTAGCTTACCATTACTCTGAGCACGGATCAGAAAACACGAGGCACCAACAACATTCTGTTCAAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCTGGTCAGCTGCTAAATGANAACTGCTTGAAGAGGAAAGCAGCTGAAGAGGATATTTCTCAAGAAGCAGAACCAAAGAAGGACCTGAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACACTTCAAGTTGGGAGTGACAATGGAGCTGACTATTGGGCACCTGCCCTTGGAGGGGGCTTTCGGTAGATCCAAGTTTATTATTATTATTATTATTATTAATTAGGGGCAGCATATACATACATATATATAAATTAATTATGCATGGTAGCACATAGAGAGGCTAGAATTAATTCATGGAAATGAATATATAACATCATGAGCAGTCAATCTGCTACAAAAACAACTAAGGCTGATTGCTCATGATGCTATAACTTCTTTCCTGAATAAAATGTGTGCTATATATCCATGTATGATATTNGTGACTATATCTTAGTATTTGCAAAGCCCTTTCAGACTTGTTGATTCATGGAAATCAAGCCTTTTCTTTGTTTTCATTAGCATGATTAAGATGGTGGTATTAATGCACTATATTTCAATGTATATGCAATATCTGTATGATTAATCATTTGATGAATGCTAGCAGCCTAGCAGTATTAACTCATGGTGATCATTATNCTTACTTATATATTACTATTCCAAGTTCCAAGTTAACAAAGTTTGTGTTGAAAGTCTCACATTGACTAAAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00357	127507	131666	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.778
SRR1783600	control	28.653
SRR1783602	moderate drought stress	39.155
SRR1811619	moderate drought stress	39.812

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	87.860
DRR006520	Root Summer glycyrrhizin high producing strain	88.170
DRR006521	Root Winter glycyrrhizin high producing strain	31.486
DRR006522	Root Winter glycyrrhizin high producing strain	28.958
DRR006523	Root Summer glycyrrhizin low producing strain	96.078
DRR006524	Root Summer glycyrrhizin low producing strain	99.493
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.520
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.689

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.164
SRR2868004	Drought Stress (root)	22.514
SRR2967015	Control (root)	32.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.940
SRR9715740	Leaf	21.881
SRR9715741	Leaf	22.437
SRR9715739	Root	22.833
SRR9715742	Root	39.823
SRR9715743	Root	34.427

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.271
SRR8749028	MeJA induced 9h	0.267
SRR8749029	MeJA induced 9h	0.119
SRR8749030	Uninduced	0.569
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.339

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.248
SRR8400027	Control - Root	48.300