Gene detail information of Glyur000357s00018134 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65980.1 | 2.00E-73 | thioredoxin-dependent peroxidase 1 |
| NR | NP_001235797.1 | 2.99E-105 | uncharacterized protein LOC100499771 [Glycine max] |
| COG | YP_560493.1 | 4.00E-52 | type 2 peroxiredoxin AhpC/TSAfamily [Burkholderia xenovorans LB400] |
| Swissprot | tr|Q9XEX2|PRX2B_ARATH | 5.00E-93 | Peroxiredoxin-2B |
| trEMBL | tr|C6SWE0|C6SWE0_SOYBN | 1.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G09240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00357 | 109332 | 111791 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000357s00018134.1 | PF08534.5 | Redoxin | 6 | 158 | 3.30E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 350.957 |
| SRR1783600 | control | 377.717 |
| SRR1783602 | moderate drought stress | 335.587 |
| SRR1811619 | moderate drought stress | 346.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 443.134 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 438.935 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 158.914 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 152.223 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 310.870 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 311.045 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 164.834 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 163.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 572.193 |
| SRR2868004 | Drought Stress (root) | 581.712 |
| SRR2967015 | Control (root) | 502.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 254.819 |
| SRR9715740 | Leaf | 323.260 |
| SRR9715741 | Leaf | 322.235 |
| SRR9715739 | Root | 416.712 |
| SRR9715742 | Root | 375.803 |
| SRR9715743 | Root | 379.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 85.499 |
| SRR8749028 | MeJA induced 9h | 68.719 |
| SRR8749029 | MeJA induced 9h | 77.376 |
| SRR8749030 | Uninduced | 21.808 |
| SRR8749031 | Uninduced | 11.812 |
| SRR8749032 | Uninduced | 47.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 581.222 |
| SRR8400027 | Control - Root | 509.314 |