Gene detail information of Glyur000357s00018131 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G28980.2 | 2.00E-140 | CDK-activating kinase 1AT |
| NR | ACU19808.1 | 0 | unknown [Glycine max] |
| COG | YP_007563291.1 | 1.00E-15 | putative serine/threonine protein kinase [Ilumatobacter coccineus YM16-304] |
| Swissprot | tr|O80345|CDKF1_ARATH | 0 | Cyclin-dependent kinase F-1 |
| trEMBL | tr|I1KIN9|I1KIN9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G09260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00357 | 92718 | 94998 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.5.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000357s00018131.1 | PF00069.20 | Pkinase | 20 | 164 | 2.40E-29 |
| Glyur000357s00018131.1 | PF00069.20 | Pkinase | 284 | 413 | 3.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.617 |
| SRR1783600 | control | 4.598 |
| SRR1783602 | moderate drought stress | 5.826 |
| SRR1811619 | moderate drought stress | 5.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.174 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.600 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.176 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.172 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.090 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.331 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.350 |
| SRR2868004 | Drought Stress (root) | 9.614 |
| SRR2967015 | Control (root) | 8.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.873 |
| SRR9715740 | Leaf | 5.203 |
| SRR9715741 | Leaf | 8.164 |
| SRR9715739 | Root | 10.525 |
| SRR9715742 | Root | 9.248 |
| SRR9715743 | Root | 9.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.800 |
| SRR8749028 | MeJA induced 9h | 5.804 |
| SRR8749029 | MeJA induced 9h | 3.908 |
| SRR8749030 | Uninduced | 2.945 |
| SRR8749031 | Uninduced | 0.743 |
| SRR8749032 | Uninduced | 1.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.544 |
| SRR8400027 | Control - Root | 9.630 |