Gene detail information of Glyur000357s00018125 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52240.1 | 3.00E-16 | RHO guanyl-nucleotide exchange factor 11 |
| NR | XP_008795066.1 | 1.92E-19 | PREDICTED: dynein light chain LC6, flagellar outer arm-like [Phoenix dactylifera] |
| trEMBL | tr|W9RUV7|W9RUV7_9ROSA | 8.00E-20 | Dynein light chain 1 {ECO:0000313|EMBL:EXB74513.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00357 | 59757 | 61153 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000357s00018125.1 | PF01221.13 | Dynein_light | 1 | 51 | 6.70E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.035 |
| SRR1783600 | control | 0.085 |
| SRR1783602 | moderate drought stress | 0.410 |
| SRR1811619 | moderate drought stress | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.025 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.242 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.192 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.335 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.133 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.212 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.086 |
| SRR2868004 | Drought Stress (root) | 0.557 |
| SRR2967015 | Control (root) | 0.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.268 |
| SRR9715740 | Leaf | 0.777 |
| SRR9715741 | Leaf | 0.092 |
| SRR9715739 | Root | 0.161 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.704 |
| SRR8749028 | MeJA induced 9h | 9.193 |
| SRR8749029 | MeJA induced 9h | 3.086 |
| SRR8749030 | Uninduced | 3.449 |
| SRR8749031 | Uninduced | 15.645 |
| SRR8749032 | Uninduced | 14.401 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.266 |
| SRR8400027 | Control - Root | 0.022 |