Gene detail information of Glyur000357s00018117.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29000.1 | 3.00E-124 | Tesmin/TSO1-like CXC domain-containing protein |
| NR | XP_003529992.1 | 0 | PREDICTED: protein tesmin/TSO1-like CXC 5-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9SZD1|TCX5_ARATH | 0 | Protein tesmin/TSO1-like CXC 5 |
| trEMBL | tr|K7L0G1|K7L0G1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G09380.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00357 | 10877 | 18834 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CPP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000357s00018117.1 | PF03638.10 | TCR | 111 | 149 | 4.00E-12 |
| Glyur000357s00018117.1 | PF03638.10 | TCR | 195 | 234 | 3.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.915 |
| SRR1783600 | control | 1.627 |
| SRR1783602 | moderate drought stress | 2.527 |
| SRR1811619 | moderate drought stress | 2.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.556 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.614 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.182 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.156 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.073 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.819 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.014 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.719 |
| SRR2868004 | Drought Stress (root) | 5.404 |
| SRR2967015 | Control (root) | 6.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.914 |
| SRR9715740 | Leaf | 4.970 |
| SRR9715741 | Leaf | 6.988 |
| SRR9715739 | Root | 2.150 |
| SRR9715742 | Root | 3.685 |
| SRR9715743 | Root | 3.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.454 |
| SRR8749028 | MeJA induced 9h | 3.191 |
| SRR8749029 | MeJA induced 9h | 2.636 |
| SRR8749030 | Uninduced | 3.148 |
| SRR8749031 | Uninduced | 2.009 |
| SRR8749032 | Uninduced | 1.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.240 |
| SRR8400027 | Control - Root | 4.575 |