Gene detail information of Glyur000356s00026081 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71400.1 | 1.00E-44 | receptor like protein 12 |
| NR | KEH21577.1 | 4.30E-172 | LRR receptor-like kinase [Medicago truncatula] |
| COG | YP_004775215.1 | 4.00E-33 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q9C9H7|RLP12_ARATH | 2.00E-56 | Receptor-like protein 12 (Precursor) |
| trEMBL | tr|A0A072TVV4|A0A072TVV4_MEDTR | 2.00E-172 | LRR receptor-like kinase {ECO:0000313|EMBL:KEH21577.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00356 | 81413 | 84514 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000356s00026081.1 | PF13516.1 | LRR_6 | 168 | 191 | 0.41 |
| Glyur000356s00026081.1 | PF13855.1 | LRR_8 | 265 | 326 | 6.70E-07 |
| Glyur000356s00026081.1 | PF00560.28 | LRR_1 | 460 | 481 | 0.19 |
| Glyur000356s00026081.1 | PF00560.28 | LRR_1 | 483 | 503 | 1.2 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.529 |
| SRR1783600 | control | 9.375 |
| SRR1783602 | moderate drought stress | 1.446 |
| SRR1811619 | moderate drought stress | 1.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.321 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.305 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.058 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.057 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.558 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.539 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.001 |
| SRR2868004 | Drought Stress (root) | 0.001 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.533 |
| SRR9715740 | Leaf | 2.037 |
| SRR9715741 | Leaf | 1.950 |
| SRR9715739 | Root | 0.046 |
| SRR9715742 | Root | 0.189 |
| SRR9715743 | Root | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.514 |
| SRR8400027 | Control - Root | 0.179 |