Gene detail information of Glyur000356s00026077


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G48760.24.00E-107Ribosomal protein L13 family protein
NRXP_004499225.11.41E-141PREDICTED: 60S ribosomal protein L13a-4-like [Cicer arietinum]
COGYP_003726038.16.00E-2450S ribosomal protein L13 [Methanohalobium evestigatum Z-7303]
Swissprottr|Q9FKC0|R13A4_ARATH6.00E-13660S ribosomal protein L13a-4
trEMBLtr|I1KZ93|I1KZ93_SOYBN3.00E-139Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G46850.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold003566255264153+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005840  ribosome

GO:0015934  large ribosomal subunit


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000356s00026077.1PF00572.13Ribosomal_L13121251.00E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control161.474
SRR1783600control161.774
SRR1783602moderate drought stress177.111
SRR1811619moderate drought stress177.108

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain416.961
DRR006520Root Summer glycyrrhizin high producing strain414.455
DRR006521Root Winter glycyrrhizin high producing strain188.695
DRR006522Root Winter glycyrrhizin high producing strain182.877
DRR006523Root Summer glycyrrhizin low producing strain325.743
DRR006524Root Summer glycyrrhizin low producing strain325.985
DRR006525Leaf Summer glycyrrhizin high producing strain95.712
DRR006526Leaf Summer glycyrrhizin high producing strain95.402

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)843.915
SRR2868004Drought Stress (root)508.794
SRR2967015Control (root)470.669

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf263.218
SRR9715740Leaf238.548
SRR9715741Leaf223.877
SRR9715739Root486.046
SRR9715742Root341.726
SRR9715743Root364.028

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h571.600
SRR8749028MeJA induced 9h159.787
SRR8749029MeJA induced 9h355.285
SRR8749030Uninduced45.286
SRR8749031Uninduced24.181
SRR8749032Uninduced59.040

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root538.575
SRR8400027Control - Root470.777

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved