Gene detail

Gene detail information of Glyur000356s00026070.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08970.4	2.00E-62	nuclear factor Y, subunit C9
NR	XP_004494629.1	1.51E-169	PREDICTED: nuclear transcription factor Y subunit C-9-like [Cicer arietinum]
Swissprot	tr\|Q8L4B2\|NFYC9_ARATH	8.00E-86	Nuclear transcription factor Y subunit C-9
trEMBL	tr\|I3TAX9\|I3TAX9_MEDTR	2.00E-167	Nuclear transcription factor Y subunit C2 {ECO:0000313\|EMBL:AFK49671.1}

Sequence

Transcript Sequence

>Glyur000356s00026070.1
ACAAAAGTGACAAACCCAAGTGCCACCATGGCACCATGCATCAATACACTTTAGTTAAGATTTCTGATTTCTGAGTCAGCAAATAGATTACCCGACTGATGATACCCTAGCGCTGTTTCTTCTTCCCCCTTCAGCCTTCCATCTTCGTTTGCCAGTGCCACCATCTTCCTCACAGTTTGACACTTCACATCTTCAGTTCTTCGCAGTCTTCCACTCTTCCTTCCTTCCCTCTTCAGCTCTTCGCAGTCGCACGAAGCTGTTCGCAGTGCTCCGCCGCGATCCGCTGTCCGTGCTCCGCCGTGGCCGAGCTCACTGCTCCCATCTTCCTCATCGCAGTTCTTCCTCCGCTCACCGTGGTCCGACGTCGTTCTCACTGCTCTCTGTCGATCTGCTATTTTCGTTCCGCTGTGAGCTCAGGTTAGTATTTGCGGAGCGCAACATCATCTGTCCGGGAAGGCGTTTATGGGCGCCAAAGTCTTGTCAAAACAATTTCATTTGTTTGAGATACCATTGTGCATGGGAGTGGGCGTTAACGCGTTTGATTTCACCTGAAAACAGAATGGATCATCAAGGGCATGGCCAGAACCCATCAATGGGGGTTGTCGGTAGTGGAGGTCAACTAACGTATGGCCAGAACCCGTATCAGCCAGGCCAAATAACTGGGGCACCAGGGTCAGTTGTTACATCAGTTGGGAACATTCAATCCACTGGTCAACCTGCTGGAGCTCAGCTGGGACAGCATCAACTTGCTTATCAGCATATTCATCAGCAGCAACAGCAGCAACTTCAGCAACAACTCCAAGCCTTTTGGGCCAATCAATACCAAGAAATTGAAAAGGTTACTGATTTCAAGAACCACAGCCTTCCCCTGGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTCAGAATGATATCAGCTGAGGCACCAGTCATCTTTGCCAGGGCATGCGAAATGTTCATATTAGAGTTAACCCTGCGTTCTTGGAATCACACTGAAGAGAACAAGAGGAGAACACTTCAGAAGAATGATATTGCAGCAGCAATCACAAGAACTGATATCTTTGATTTCCTGGTTGACATTGTGCCTCGAGAGGACCTGAAAGATGAAGTGCTTGCATCAATCCCAAGAGGAACAATGCCTGTTGCAGGGCCTGCTGATGCTCTTCCTTATTGCTATATGCCACCTCAGCATGCCCCCCAAGTTGGAACTGGTGGTGTCATAATGGGTAAGCCTGTGATGGACCCAAACATGTATGCTCAGCAATCTCATCCCTACATGGCTCCACAAATGTGGCCACAGCCACCACCAGACCAGCGACCATCATCTCCAGATCTTTAACTGCTGTATTGTGGACGTGTCATGGAAGTTAAGCTGGATAAAATGTTAATTTTCCGTTGGTCTTCCGATGATTGTTGATATTTACTTAAATTTAATTCCGTTGATGATATTTATTGGCGAATAGCAGGAATTTTACTTTAATTTAACTTCTTTGTCAGCGTAACATTTTATGCACTGGATTTTTGCAATCTTTTCGTTCACATCACGGGCTTCCTTGTAAAATACCTGAGAAGGAGCGAGAAGGAAGTGCTACCTAGTTGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00356	17010	20131	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YC
EAR motif-containing Proteins	NF-YC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0005622 intracellular

GO:0016602 CCAAT-binding factor complex

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000356s00026070.1	PF00808.18	CBFD_NFYB_HMF	101	164	6.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	55.016
SRR1783600	control	55.293
SRR1783602	moderate drought stress	52.182
SRR1811619	moderate drought stress	52.227

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.287
DRR006520	Root Summer glycyrrhizin high producing strain	55.963
DRR006521	Root Winter glycyrrhizin high producing strain	47.168
DRR006522	Root Winter glycyrrhizin high producing strain	46.290
DRR006523	Root Summer glycyrrhizin low producing strain	50.110
DRR006524	Root Summer glycyrrhizin low producing strain	49.925
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.535
DRR006526	Leaf Summer glycyrrhizin high producing strain	23.611

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.270
SRR2868004	Drought Stress (root)	52.725
SRR2967015	Control (root)	53.792

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.114
SRR9715740	Leaf	21.616
SRR9715741	Leaf	22.160
SRR9715739	Root	46.105
SRR9715742	Root	45.534
SRR9715743	Root	41.946

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.211
SRR8749028	MeJA induced 9h	31.716
SRR8749029	MeJA induced 9h	27.059
SRR8749030	Uninduced	8.085
SRR8749031	Uninduced	4.931
SRR8749032	Uninduced	9.289

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.861
SRR8400027	Control - Root	47.589