Gene detail

Gene detail information of Glyur000355s00013952.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26000.1	4.00E-102	Ribonuclease inhibitor
NR	XP_004504484.1	0	PREDICTED: F-box protein SKIP14-like [Cicer arietinum]
Swissprot	tr\|Q9LU91\|SKI14_ARATH	1.00E-132	F-box protein SKIP14
trEMBL	tr\|A0A072TUL9\|A0A072TUL9_MEDTR	0	F-box SKIP28-like protein {ECO:0000313\|EMBL:KEH20543.1}

Sequence

Transcript Sequence

>Glyur000355s00013952.1
ATGAATGAGATGGCGTTGAATTTCTCGCATCGACCGATTTTTCCGGGTGGTCTGTCTGAGGATAATTTGGTTGCACCGATGAGGATGGGGAATGGGTACCGGGTGGAGGGTATTCCAGAGAAGAGTGGTGGTGATGGATTTGGTAAGGGATGGCATGATGTTGAGAATCCCTTTGATTATGGAAGGGATAGNTGTGATAGGGGTGCCACTCAGGATTCTGTCTCCAAGGACATTCTTGATCTTTTGCCTTCTGATCCCTTTGGCATGGACATCAGCACTACCTTCACTGCCATCACCGGATGGCTCGAGGATTTGGAGGTTGATTATGGTGGATACCGTGGGGATGAGCTTGGGGAGAGTGACAACAACTACCAGCTGTTTGCTGGGTTGAATTTTATTTGGAATAATGCTATGAGGTTCCACACGTTCCCTGGGGGAAATGTGTGCGTTGAGGAGAAGAAATTGCACTGGCAGAGGGGATTGGGCGAGTGTTCTCGGAGAGAAGTTGGAGCTGCCTCCTGCAGTTTTGGCTCNGGATCTGCTTGTAACATGGATGATGTGTTGGATTTTGGCTGTGATTATAAAGATGTGGCGATTGCCAGTGTGTCAGGTGACACAAACATGGAAGATGTGAATTGCCTTGGAGAAGACGAGCTCGCTCCNCATCCGGCTCTAAGTTTTTCTCTCAGTTATCTGGGCTTGTCTGATCTTCTTTCTGTTGAGAGAGTATGCAAATCTCTGCATTCTACGGTTCGAGGGGATCCGCTTTTGTGGAGAAGTATCCACATTTACCCGCCTTTAAATGAGAGGATTACTGATGATGTTCTTTTCCAATTAACCAATAGGGCTCAAGGTAATCTTCAATGCTTGAGCCTGGTGGAGTGTACTAGGATAACTGATGATGGTCTGAAGCGTGTTCTTGAATTAAATCCCAGGTTAATCAAGTTGAGTGTTCCTGGATGTACAAGACTCAGTATTGAAGGTATTGTGGGTATGTTAAAAGCTTACAACTCTATGGGTACACCAGGGGTGAAGCATTTACACATAGGTGGTCTTTATGGTGTTACACAAGAGCATTTTGATGAACTGAAGCTCTTGTTGGGCACTGATAGCCAGCTGCAGCAGCACTTTCACAAACCAAAGTTTTATCACAGGGAAAAAATGTATCTGTCCTGTGATGATGATCGGGCCATAGATATTGAAGTTTGTCCACGATGCCAGAATTTAAGGCTTGTATATGATTGTCCATTGGAGGGTTGTCATGGGGTGGGGCACACCACTCAGGTGTGCAGGGCATGCACTCTTTGCATACCACGGTGTAGTCAATGTGGCCGCTGCGTCTATGACAGTGAATATGAAGAAACATTTTGCCTGGAATGGCTTTGCTCTCCTTGTGCTAAGCAGCTGGTCAAATGTTCAGAAAGGACAGATGGAAAAGTTGGGCCNGACAGGTCGGCTGTTCTTGACGAACAGAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00355	175528	177877	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000355s00013952.1	PF00646.28	F-box	228	261	0.00017

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.159
SRR1783600	control	13.188
SRR1783602	moderate drought stress	18.585
SRR1811619	moderate drought stress	18.961

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.056
DRR006520	Root Summer glycyrrhizin high producing strain	27.159
DRR006521	Root Winter glycyrrhizin high producing strain	18.122
DRR006522	Root Winter glycyrrhizin high producing strain	23.849
DRR006523	Root Summer glycyrrhizin low producing strain	22.111
DRR006524	Root Summer glycyrrhizin low producing strain	25.001
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.207
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.871
SRR2868004	Drought Stress (root)	34.785
SRR2967015	Control (root)	40.879

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.816
SRR9715740	Leaf	23.302
SRR9715741	Leaf	26.170
SRR9715739	Root	17.245
SRR9715742	Root	32.133
SRR9715743	Root	22.560

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.429
SRR8749028	MeJA induced 9h	12.584
SRR8749029	MeJA induced 9h	8.860
SRR8749030	Uninduced	9.038
SRR8749031	Uninduced	15.720
SRR8749032	Uninduced	18.105

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.704
SRR8400027	Control - Root	30.239