Gene detail

Gene detail information of Glyur000355s00013950

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13080.1	0	multidrug resistance-associated protein 3
NR	KEH20546.1	0	multidrug resistance protein ABC transporter family protein [Medicago truncatula]
COG	NP_969385.1	6.00E-153	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q9LK64\|AB3C_ARATH	0	ABC transporter C family member 3
trEMBL	tr\|A0A072TTN1\|A0A072TTN1_MEDTR	0	Multidrug resistance protein ABC transporter family protein {ECO:0000313\|EMBL:KEH20546.1}

Sequence

Transcript Sequence

>Glyur000355s00013950.1
ATGGCCATTTCGGATTCTCTGTTGGGAACAGCCAATGTAGCATTCTTCTACGGGATTCTGATATGGCTTTTAGTCGACAGTTTGAGACTGAGCCAACGTAACCATGTTGCCTTCAATTTGAAAAAACGTAGGCCAACAGTTTTCGCCACAGTAACCGTTCTATCAAGTGCTGTTATTTCCGTTCTGAACGTTGCTTTTGCTTTTTACACTTACAGCACNCGGAGGATCATAGGGTATAACTCTGTTTCCTTGGCTGTAACCTGGGTTTTAGCAACCACGGTTTCGTTGTATTCAGTGAAGAACAACACACTTGGGGAGAACAATAGATTCCCCCTTGTTCTGATTCTATGGTGGGTCTTTGCCTGTATCGTAGACATGTTCTCTGTGTCTTTAAAGCTTGTGAAAATTAATCTCGAGTCCTTGAACTTGTGGTTTTTCTTGTCCGAGGAGAATAACATAGTTGATGCGNTTTCGTTGCCTTTGTTGTTGCTTCTCTGTTTCAATGCACTGCCCAATGTGTGTGCGAGGGAACAAAGTGAAATGGAGCAACGGTTACTTCAGAAAGAGATGGAATCTTCTGTGGAAGAAGACGAAGATGAAGAGGCCTTCACAAAAGCAAGCAGGTGGAGCAAACTCACGTTCAGATGGCTGAACCCCATTTTCAGCAGGGGTCGGATTCAGAAACTTGAGCACGCTCATATTCCTTCTGTTCCTCGTTCTGAAGCTGCAGAGAGTGCTTCTTCCATGTTGGAAGAATCGCTTCGCAAGCAGAAGCTTGAAGGGGGTTCCTTTGTGAATTTTTTATTGTCCAATGATAATAATAATTCGAGCATCCAACATGGACTGATTCTTGCGTTCGTTTTCTTCCTCTCAAAGACGGTGGAGTCACTAAGTCAAAGGCAATGGTACTTTGGTGCTCAACGAATTGGAATTCGGGTGCGTGCAGCTCTTATGGCTCTAGTTTATAGCAAGTCCCTGATGATTAAGTGTGCTGGACCCACACATGGAAAGATCATAAACCTGATAAATGTGGATGTTGATAGAATTGGGGACTTCTGCTGGTACATTCATGGGGTTTGGTTGCTTCCAGTTCAGGTCATTTTGGCCTTGGTAATATTGTACATAAACCTGGGCTGTGCTCCTTCCATTGCTGCACTTACTGTCACCATTTTGGTCATGGTGTTCAACACACCTTTGGCTAACATGCAAGAAAATTTGCACTCCAAGATCATGGAAGCTAAGGACTCAAGAATCAAAATGACCTCAGAGACCATGAAGAACATCAGGATTTTAAAATTGCATTCATGGGAGTCCACTTTTCTGCAGAAACTGCTCCAATTGAGGGACACAGAGAGGAGATGGCTGAAGAAATACCTCTACACATGCTCAGCAGTAGCCACTCTATTCTGGGCATCTCCAACTTTGGTTTCTGTTGCCACTTTTGGGGCTTGTATACTGGTGAAAACAGAACTAACAGCAGCTACAGTTCTCTCAGCTCTAGCAACATTTCGTATCTTACAAGAACCTATTTACAACTTACCTGAGCTTATTTCCATGATAACTCAGACAAAGGTCTCTATTGATCGAATCCAGGAATTCATCAAGGAAGAAGATCAAAACCAATTCATGAATAGGCATGCTCCCCATACTTCAGCAATTGCTATTGAAATCAAGCCAGGAGAATATGCATGGGAAGCAAATGATCAAACCCACAAGAAACCAACAATTCGTATTACAGAAAAAATAATGATAAAGAAAGGTCAAAAAGTAGCAGTTTGTGGGTCAGTAGGGTCTGGCAAATCAAGTTTTCTCTGCACTATGCTTGGTGAGATTCCATTGGTTTCTGGGGCAGTAACTAAAGTTTATGGCACTAGAAGTTATGTACCCCAGAGTCCATGGATTCAGTCTGGAACTGTAAGAGAAAACATATTGTTTGGAAAGCAAATGCAAAAGGACTTTTATGAAAATGTTCTGGATGGTTGTGCTTTGCACCAGGATATCAACACGTGGAGCGATGGAGATTTGACCCTGGTGGAGGAGAGGGGCATAAATTTAAGTGGAGGACAAAAACAGCGGATTCAACTAGCAAGGGCTGTTTACAATGATTCAGATATTTATTTCCTCGATGATCCTTTTAGTGCTGTTGATGCCCATACTGGAAGCCATTTGTTTAAGAAATGTCTTATGAAACTCTTATGTGATAAAACGGTTGTTTATGCTACACATCAACTGGAATTCTTGGAAGCTGCAGATCTTATTTTAGTTATGAAAGATGGAAAAATAGTCGAGTCAGGAAGGTATGCAGATCTCATAGCATGTCCCAGTAGTGAACTTGTCCAACAAATGGCTGCTCATAAAGAAACAATAACCCAAATCCCATGCCACAAGGATGATTTCATTAGTTGCAGACCCTGCCAAAAAAATCCAACTGAAATTGCAGAAGAAAATATTCAAGAGATCATCATGGATTGGAAGAGAACTAGAGAAGAGGAAGCAATGACGGGTCGAGTAAAATGGAGTGTTTACTCAACCTTTGTTACATTGGCTTATANAGGAGTGCTTGTTCCGGTTATTCTCCTCTGTCAAATTCTCTTTCAAGTTATGCAGATGGGAAGCAATTATTGGATTTCTTGGGCCACAGAACAAAAGGGCAGGGTCGACAATAGGGAGCTTATGGGAACATTTGTTCTTCTGTCTGGTGGCAGCTCCATCTTCATAATGGGAAGGACTGTTTTAATGGCAACAGTTGCCGTGGAGACTGCTCAGCGTCTTTTTCATGGAATGATCACATCAGTTTTCAGGGCACCTGTTTCATTTTTTGATACCACACCTTCAAGCCGAATTCTGAGTAGGTCATCTACGGATCAAAGTACAGTAGACACAGACATACCCTACAGATTAGCTGGACTAGTATTTGCACTTATCCAGTTATTGAGTATCATCATGCTAATGTCCCAGGTTGCCTGGCAAGTCATTCTTCTCTTTTTCGTGGTTCTTGCTATCTCCATCTGGTATCAGTATTCAAATGATGAGGGAAGTTATGTACTTTTGCAGGCTTATTACATCACTACGGCCAGGGAATTAGCCAGGATGGTGGGGATTCGAAAGGCTCCAATTCTGCATCACTTCTCAGAATCAATTGCTGGGGCTGCCACAATCCGTTGCTTCAATCAAGAGCAAATATTCTTGAAAAAGGTTATGGCTCTAATTGATGACTATTCTCGGGTAGCCTTTCACAATTATGCTACCATGGAATGGTTGTCTGTCCGGATCAATTTTCTCTTCAATTTGGTCTTCTATGTTGTTCTCGTCATCTTGGTTACCCTGCCAAGGTCTGCCATCGATCCAAGCTTGGCGGGTCTTGTAGCTACTTATGGATTGAATTTGAATGTGCTTCAGGCTTGGGTGATATGGAATCTTTGCAATGTCGAGAACAAAATGATATCGGTAGAGAGAATATTACAGTTCTCTAGCATACCAAGTGAAGCACCATTGATTATTCAAGATTGTAGGCCAGAACCAGAGTGGCCTAGGGATGGAAAAATTGAACTTCATAACCTTCATATACAGTATGATCCTGCTGCTCCTATGGTTCTCAAAGGTGTCACTTGCGTCTTCCCAGGACAAAAGAAAATTGGAATAGTAGGCAGGACAGGGAGTGGGAAATCTACTCTGGTGCAAGCTCTCTTTCGAGTGGTGGAGCCTTTGGAAGGATGGATACTTATTGATGGTGTACACATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGTATAATTCCTCAGGATCCAACCTTGTTTCTTGGTACTGTAAGGACCAACTTGGATCCCCTGGAACAACATAAAGATCAAGAACTTTGGGAGGTTCTCAGCAAGTGCCATCTCGCTGAGATAGTAAAGCAAGATCCAAGGCTTCTTGATGCACCAGTGGCTGAGAACGGAGAAAATTGGAGTGTTGGACAAAGACAACTAGTTTGCCTTGCTAGGCTGCTATTGAAGAAAAGAAGAATTCTGGTCCTAGACGAGGCAACTGCATCCATTGACACTGTAACTGATAATTTAATTCAGAAGACTATCAGGGAAGAAACAAGTGGATGCACAGTCATTACAGTGGCACATAGAATTCCTACAGTCATTGATAATGATTTGGTTTTGGTCCTTGATGAAGGGACAATTGCNGAGTATGATCAACCAGCTCAGTTGCTACAGGACAGTTCTTCTTCGTTCTCTAAGTTGGTGTCAGAATTTTTGAGGAGATCATCCCAAAATTCCTTAATTCCTTTGGCATTTGGCATTTGTTCAACACCCAGATTATGGATTCATGAAGTTCGAGGAGCTGATTTATTCACTCAAGAAGGTTGGATCAAGAGAGTTCTCAATGACTGGTCTGCAGCATTGTTTAAAATTTTTAAACTGGGGCCACACCAGATTCGTGAGGTCCATTCAAGAGCGCCAGTCTTCAAGTTG

Protein Sequence

>Glyur000355s00013950.1
MAISDSLLGTANVAFFYGILIWLLVDSLRLSQRNHVAFNLKKRRPTVFATVTVLSSAVISVLNVAFAFYTYSTRRIIGYNSVSLAVTWVLATTVSLYSVKNNTLGENNRFPLVLILWWVFACIVDMFSVSLKLVKINLESLNLWFFLSEENNIVDAXSLPLLLLLCFNALPNVCAREQSEMEQRLLQKEMESSVEEDEDEEAFTKASRWSKLTFRWLNPIFSRGRIQKLEHAHIPSVPRSEAAESASSMLEESLRKQKLEGGSFVNFLLSNDNNNSSIQHGLILAFVFFLSKTVESLSQRQWYFGAQRIGIRVRAALMALVYSKSLMIKCAGPTHGKIINLINVDVDRIGDFCWYIHGVWLLPVQVILALVILYINLGCAPSIAALTVTILVMVFNTPLANMQENLHSKIMEAKDSRIKMTSETMKNIRILKLHSWESTFLQKLLQLRDTERRWLKKYLYTCSAVATLFWASPTLVSVATFGACILVKTELTAATVLSALATFRILQEPIYNLPELISMITQTKVSIDRIQEFIKEEDQNQFMNRHAPHTSAIAIEIKPGEYAWEANDQTHKKPTIRITEKIMIKKGQKVAVCGSVGSGKSSFLCTMLGEIPLVSGAVTKVYGTRSYVPQSPWIQSGTVRENILFGKQMQKDFYENVLDGCALHQDINTWSDGDLTLVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGSHLFKKCLMKLLCDKTVVYATHQLEFLEAADLILVMKDGKIVESGRYADLIACPSSELVQQMAAHKETITQIPCHKDDFISCRPCQKNPTEIAEENIQEIIMDWKRTREEEAMTGRVKWSVYSTFVTLAYXGVLVPVILLCQILFQVMQMGSNYWISWATEQKGRVDNRELMGTFVLLSGGSSIFIMGRTVLMATVAVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIMLMSQVAWQVILLFFVVLAISIWYQYSNDEGSYVLLQAYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQEQIFLKKVMALIDDYSRVAFHNYATMEWLSVRINFLFNLVFYVVLVILVTLPRSAIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIQDCRPEPEWPRDGKIELHNLHIQYDPAAPMVLKGVTCVFPGQKKIGIVGRTGSGKSTLVQALFRVVEPLEGWILIDGVHISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHKDQELWEVLSKCHLAEIVKQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRRILVLDEATASIDTVTDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDEGTIAEYDQPAQLLQDSSSSFSKLVSEFLRRSSQNSLIPLAFGICSTPRLWIHEVRGADLFTQEGWIKRVLNDWSAALFKIFKLGPHQIREVHSRAPVFKL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00355	151982	158868	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000355s00013950.1	PF00664.18	ABC_membrane	263	509	9.00E-25
Glyur000355s00013950.1	PF00005.22	ABC_tran	583	712	2.00E-16
Glyur000355s00013950.1	PF00664.18	ABC_membrane	859	1125	7.00E-21
Glyur000355s00013950.1	PF00005.22	ABC_tran	1199	1347	1.00E-29
Glyur000355s00013950.2	PF00664.18	ABC_membrane	263	509	8.90E-25
Glyur000355s00013950.2	PF00005.22	ABC_tran	583	712	2.00E-16
Glyur000355s00013950.2	PF00664.18	ABC_membrane	859	1113	2.10E-26
Glyur000355s00013950.2	PF00005.22	ABC_tran	1187	1335	1.00E-29
Glyur000355s00013950.3	PF00664.18	ABC_membrane	263	509	8.90E-25
Glyur000355s00013950.3	PF00005.22	ABC_tran	583	712	2.00E-16
Glyur000355s00013950.3	PF00664.18	ABC_membrane	859	1125	6.90E-21
Glyur000355s00013950.3	PF00005.22	ABC_tran	1199	1347	1.00E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.449
SRR1783600	control	0.468
SRR1783602	moderate drought stress	1.737
SRR1811619	moderate drought stress	1.701

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.336
DRR006520	Root Summer glycyrrhizin high producing strain	2.385
DRR006521	Root Winter glycyrrhizin high producing strain	22.989
DRR006522	Root Winter glycyrrhizin high producing strain	22.312
DRR006523	Root Summer glycyrrhizin low producing strain	1.161
DRR006524	Root Summer glycyrrhizin low producing strain	1.124
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.078
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.793
SRR2868004	Drought Stress (root)	4.232
SRR2967015	Control (root)	5.249

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.719
SRR9715740	Leaf	0.502
SRR9715741	Leaf	1.219
SRR9715739	Root	0.275
SRR9715742	Root	5.908
SRR9715743	Root	4.609

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.072
SRR8749028	MeJA induced 9h	1.059
SRR8749029	MeJA induced 9h	0.301
SRR8749030	Uninduced	0.396
SRR8749031	Uninduced	0.374
SRR8749032	Uninduced	0.168

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.135
SRR8400027	Control - Root	6.027