Gene detail

Gene detail information of Glyur000355s00013945

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27880.1	0	DEAD/DEAH box RNA helicase family protein
NR	XP_004504477.1	0	PREDICTED: ATP-dependent DNA helicase Q-like 5-like isoform X1 [Cicer arietinum]
COG	YP_692881.1	9.00E-79	ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2]
Swissprot	tr\|Q0WVW7\|RQL5_ARATH	0	ATP-dependent DNA helicase Q-like 5
trEMBL	tr\|A0A072TSR0\|A0A072TSR0_MEDTR	0	RecQ family ATP-dependent DNA helicase {ECO:0000313\|EMBL:KEH20554.1}

Sequence

Transcript Sequence

>Glyur000355s00013945.1
ATGGAGCCCGATTCAGACTCCGATGGGTCTCACGTCTCTACAACTCCTCCAAGACAAGCAAGTCCACCACCACCGCCACCACAACCACAACCACCTCGTATAGTTTCCAACAAACCCACAACCAGAATCAAACCCTCAAAATCAAAAACAGTCCCTTCCGAACCCCCAAAAGCCCCATTGGAATCCGAAACGATCCAACAAGACCCTTTCTGTCTCCCTTCCATGCCTTTCCACATTCGACGACCCTCTGATTGTGTTCTCGCGCCGTTAACCTCCACTTCCCACTCCATCGAAGCCCTCCCCGCCGGGTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATTCGAAGACCCTTGCTCAATTTAGAAGCTTCTGGAAACGAAACGGTTTTTAATTCCTCGTCCGGTTCGGTCCCCAAGGTGAAGAAGCACCCTAACTTGATAGGTGCCAGTGTGCCAATGCCGACGCCGAAGTTACGGAAATGTGGCGGCGGCGAAGGGAACTTTGTGAAACTGAACTTGAGTGGCAAGAGAAAGAAGTTTTTGAACAAGGGGTGGAAGAAAAATGGGAAATTTAAAAGGTACAGAAGAAGTAGTAGTAGTAGTAAAGGGAAATTGGGACATGNAGGGGAGGATCAAGTAGAGCCTTTTGAGGAGGATGGTTTGGTTGTGGAAAGTGCTTCTAAACAGAAGAAGCAAACGGGGTCTTGTAAGACAAGGGAAATTGATTGCAATGTGTTGGAAGAGGCTTTGTCTGCGGCACGGGTTGAGGCTTCTGATGAGAACTTGGTGAAGTTGCTGAAATTGGTGTATGGCTATGATTGTTTTCGAGAGGGGCAGCTTGAGGCAATTAAGAATGTTCTTGCTGGGAAGTCAACTATGCTTATTTTGCCGACGGGAGCGGGGAAGTCATTGTGTTATCAATTGACTGCATTGATTTTGCCTGGGATTACTTTGGTTGTTAGTCCATTGGTAGCTTTGATGATTGATCAGCTAAGGCATTTGCCTCCTCTCATTAGGGGTGCTCTCATATGCAGCACTCAGGTGCTTTTTGTTTCACCAGAGAGGTTCCTGAATGAAGAGTTTCTGTCTAATATTTCTGCTATATCGTCCGTCTCACTCGTTATTGACGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTTATGAGACTTAGGGCATCTCTGCTTCATAAAAGTTCTGTTCTTGCAATGACAGCAACTGCTACAACCACAACTTTAGATGCCATCATGTCTGCCCTAGATATTCCTTGCACAAATCTTATTCAGAAGGCACAGTTAAGGGACAATTTGCATTTATCAGTGTCTCTGAATGAAAGACCTACTGGTTCTGATAAAGTCTTCTCCTTTCGCGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGGTTCTGAAACTGATCTGGTTAGCAGATACTTAAATGATAACAATATCTTGGCAAAGAGTTATCACAGTGGAATTTCTGCAAAGGAACGTGGCTATGTACAGGAGCTGTTTAATTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTCTACCTGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGAGCTGGAAGGGATGGGAGGTTGTCTTATTGTCACCTATTTTATGACGATGAGACATATTTCAAGCTTCGTAGTCTAATGCATAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGCACGAAGTGTTTCCTGCTGACAAAAACTCCTGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTCACTGTGTTGACACGCTTGGAGCTGGGCGATGTGCAGTACTTACATTTACTTCCACAGACAAATACTACTTGTGCTCTGAATTTTCATAAGACTCCGCCGCCATTTCTTGCCCAAAAGGTTTCTGCTATTGCTGTAATTCTAAAAAGATCTGAAAATAAGCAAGGGCAATACGTTTTTGATATTCCAACTGTGGCAAATGACATGGGGGTTACAACAGTTGAATTAACAAATAAGTTGTACGACCTGAAGTTGATGGGAGAAATTACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATTCTTGAAGTCCCAACAGACTTTTTTACTCTATCAACAGATATTACCCGATGGCTATCAGAAGTTGAAAGTTGTAAGGTACGAAAAATGGATGCAATGTTCAATGCTGCATATTTCACAGTAAATCTATGTGATAAGATGCACGGTTGCAGCAATGCCGATCACACACCATGCTTGCAAAGGATAATATTGGATTACTTTGCTGGAGTTGATAATACTGATTTCTGCAAGAAAATTGGTCAAAGCAGCCCTTTCCTTCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTCACAGGCTCGATTTACACCAAGAGCCATTGCGAGGATAATGCACGGAATTGCAAGCCCAGCCTACCCTTCTACAATTTGGTGTAAAACCCATTTCTGGGGAAGGTATACCCATATAGACTTCAAGGTGGTGATGGAAGCAGCAAAGGCAGAGCTTAAGAATTTAATTGGAAAAGATATGCTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00355	123809	130607	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000355s00013945.1	PF00270.24	DEAD	277	416	3.90E-09
Glyur000355s00013945.1	PF00271.26	Helicase_C	483	559	9.50E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.165
SRR1783600	control	1.244
SRR1783602	moderate drought stress	3.674
SRR1811619	moderate drought stress	3.467

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.435
DRR006520	Root Summer glycyrrhizin high producing strain	4.319
DRR006521	Root Winter glycyrrhizin high producing strain	3.568
DRR006522	Root Winter glycyrrhizin high producing strain	3.555
DRR006523	Root Summer glycyrrhizin low producing strain	0.867
DRR006524	Root Summer glycyrrhizin low producing strain	0.907
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.252
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.189

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.349
SRR2868004	Drought Stress (root)	2.418
SRR2967015	Control (root)	2.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.407
SRR9715740	Leaf	0.095
SRR9715741	Leaf	0.293
SRR9715739	Root	0.168
SRR9715742	Root	2.247
SRR9715743	Root	1.708

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.554
SRR8749028	MeJA induced 9h	4.479
SRR8749029	MeJA induced 9h	2.913
SRR8749030	Uninduced	0.683
SRR8749031	Uninduced	0.489
SRR8749032	Uninduced	0.323

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.854
SRR8400027	Control - Root	8.452