Gene detail

Gene detail information of Glyur000355s00013943

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67590.1	5.00E-67	Remorin family protein
NR	XP_007158709.1	0	hypothetical protein PHAVU_002G175800g [Phaseolus vulgaris]
Swissprot	tr\|Q9M2D8\|Y3126_ARATH	7.00E-10	Uncharacterized protein At3g61260
trEMBL	tr\|V7CMY7\|V7CMY7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30703.1}

Sequence

Transcript Sequence

>Glyur000355s00013943.1
GTCCTGGTCAAGATTGGGGGTCCCCCAAGCAAAACAATCAAATTTATGAAACTGTCCGTATCATCAGAGCCATACCTTGGAGCACAGCCCCTCATGGCCACGTGAAAAGGGTCAGAAACCTCCATTATCAGACCTTATTCTCCAGGAGCATCACAGATCATCTATGCTCCTGCCAATAATATCCCACCGTCCACGTGTCCATCACCCCCCATGTTATTCATCTAGATCTAGTAACCGTTAAAAAGGACAACCATAATTTTAACACACCCCCCTCTGTCTTGGGAACAGTACTATATTGTTTTCCTTCCTAGTGGACATGTCACGGACACATAAACCAAGAAACTCCTTCCATGATTCCTCTGCCAACTCCAGAGTGAAGATGAACTGTGGACTCCAACCCACATGGCACCTGCATTACTCAGTAATAAAAGTCCACCAATTCCCAAGAATGAGATACGTGGAAGACAAGGGATGCTATAACCAAGGAGCAGCAGCATCACAAGAGATCCCAAATAGCAGTGCCATGTATTCAGAGTTCCACAAGGGAAAAGATGCTACCACCCGTGTTTCCAATCATCACCATCGAATAAGCATGGGAAAACCAACTCCATCCAAGTGGGACGATGCACAAAAATGGCTTGTGGGGTTGTCAAAAGGTGGAGAGAAAAGCCAGTCAAAAAGCAAGCCCAGAAACTCAAATGCAGATGACTTGAGATTGATAGCTCCTGTGCCACAGAAGGAGCAGGATTATTCAAGTAGTGAGAAGGAAGAGGAAGAACGTGATGGAATATGCCATGATGATTTCATGACTACTACTAGTACTACTACTCAGTATGAAGCAGAAACAAAGAAGGTAGAATGTGATGATGAGTCAATTTGGAGAATGAATAATAAGCACACACCATCAGAGAACACAATCCAAGTACAATCAGTGTGTTTTAGAGACATGGGGACTGAGATGACACCTATTGCTAGTCAAGAGCCTTCAAGAACTGCCACCCCAATTAGAGCCACAACTCCTGCAACTCGTAGTCCAATCCATTCAGGGACTTCAACTCCAATGAGGGGTCAAAATTATGGGTTGCAAGCTGATTCTGCTGAGGGAAACCTTCCCAGCAGAGGCAATGCTACAACTAGTAGACAGTGTGGGGAAGGATCAGTCCCTTGCAAGATGGCTGAGAAGAAGGTTGAAGATCAAGCTAGAAAGTTGAGTCCTCTTGAAAGCCGAGCAATGGCTTGGGATGAGGCAGAACGTGCCAAATATATGGCCAGGTTTAAGCGTGAAGAGGTGAAGATTCAAGCATGGGAAAATCATCAGATAAGAAAAGCTGAAATGGAAATGAAGAAAATGGAGGTAAAAGCTGAAAGAATGAAAGCTTTGGCACAAGAAAGGTTAGCAAATAAACTGGCTGCAACAAGGAGGATAGCTGAAGAGAAGAGAGCCAATGCACAAGTAAAGCTGAATGACAAAGCTCTGAGGACTACCGAAAGGGTAGAGTATATAAGAAGGACAGGGCACGTGCCTTCTTCATTCTCCATCTCTTTCAATTTTAAGTTGCCTTCCATTTGCTGGTAGCAATATCCATATGATGTAATATGTTGTATGAAAAATATAAAACAACATTTTGAATCTGGCCCAATATATTTATGCTACTTATGCAATAATCTTGCAAGTTAATTACATGATGTTTTTATTACTTGCTCTCTTGGTTATATCCTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00355	117178	121210	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000355s00013943.1	PF03763.8	Remorin_C	301	406	7.70E-34
Glyur000355s00013943.2	PF03763.8	Remorin_C	257	362	6.30E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.796
SRR1783600	control	0.834
SRR1783602	moderate drought stress	1.074
SRR1811619	moderate drought stress	1.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.262
DRR006520	Root Summer glycyrrhizin high producing strain	1.207
DRR006521	Root Winter glycyrrhizin high producing strain	2.794
DRR006522	Root Winter glycyrrhizin high producing strain	2.889
DRR006523	Root Summer glycyrrhizin low producing strain	0.448
DRR006524	Root Summer glycyrrhizin low producing strain	0.513
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.476
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.445

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.626
SRR2868004	Drought Stress (root)	14.152
SRR2967015	Control (root)	18.403

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.181
SRR9715740	Leaf	0.222
SRR9715741	Leaf	1.370
SRR9715739	Root	0.058
SRR9715742	Root	0.222
SRR9715743	Root	0.564

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.696
SRR8749028	MeJA induced 9h	0.815
SRR8749029	MeJA induced 9h	1.409
SRR8749030	Uninduced	1.107
SRR8749031	Uninduced	1.608
SRR8749032	Uninduced	1.355

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.263
SRR8400027	Control - Root	7.472