Gene detail information of Glyur000355s00013940 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67570.1 | 8.00E-128 | Protein of unknown function (DUF3537) |
| NR | XP_004504467.1 | 0 | PREDICTED: uncharacterized protein LOC101499908 [Cicer arietinum] |
| trEMBL | tr|A0A072U3Z3|A0A072U3Z3_MEDTR | 0 | Extracellular ligand-gated ion channel protein {ECO:0000313|EMBL:KEH20560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00355 | 97377 | 101490 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000355s00013940.1 | PF12056.3 | DUF3537 | 49 | 435 | 1.10E-128 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.760 |
| SRR1783600 | control | 3.801 |
| SRR1783602 | moderate drought stress | 4.355 |
| SRR1811619 | moderate drought stress | 4.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.697 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.545 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.485 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.574 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.308 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.138 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.298 |
| SRR2868004 | Drought Stress (root) | 12.808 |
| SRR2967015 | Control (root) | 14.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.664 |
| SRR9715740 | Leaf | 2.234 |
| SRR9715741 | Leaf | 2.897 |
| SRR9715739 | Root | 3.821 |
| SRR9715742 | Root | 6.331 |
| SRR9715743 | Root | 6.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.828 |
| SRR8749028 | MeJA induced 9h | 2.965 |
| SRR8749029 | MeJA induced 9h | 1.802 |
| SRR8749030 | Uninduced | 1.244 |
| SRR8749031 | Uninduced | 0.639 |
| SRR8749032 | Uninduced | 0.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.822 |
| SRR8400027 | Control - Root | 10.678 |