Gene detail

Gene detail information of Glyur000355s00013938.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G67560.1	PLAT/LH2 domain-containing lipoxygenase family protein
NR	XP_004504466.1	PREDICTED: lipoxygenase 6, choloroplastic-like [Cicer arietinum]
Swissprot	tr\|Q9CAG3\|LOX6_ARATH	Lipoxygenase 6, chloroplastic (Precursor)
trEMBL	tr\|I1KS01\|I1KS01_SOYBN	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000355s00013938.1
AAAAAAATTTATACAAGGACCAAAACACCTGTTTTGGTCAAGCAACTTACTTCAGCTCTTGATAGTATTACTCAAGCATATAAACATAATAACATCCAAGTCTCCTTAGATATCCGTATGCCATTGGAGATCCCTTTCAAACAACAGTATGTTTGTGGTGAAGTCGCCAAATCTTTGCTTCCTCCGATCTCGGAGGGTGATCGCCGGCGGCAACGACGACAGGCGCCGGGAACTTGGATGGCGGAGGGGCGTGCAGGTTGAAGCGGTGATCGGCGGCGGGGACAAGGGTGGCCGGAGCCAGACTGCGGCGACGACTACGACGACTCCGTTGGACAGCAAAGAGACCAGCAACGGCTCGGTGCCACGTGGATCCTCGAGCAGCAGCGAGGGTATAGAAGTGAAGGCGGTGGTGACGATTAGGAAGAAGATGAAGGAGAGCATCGGTGAGATGGTTGAGGATCGGTGGGAGTACCTCATCAATGGAGTTGGTCAGGGGATTCAGATTCAGCTCATCAGTGAACAAATTGACCCTGTTACCAATTCTGGAAAAAGCGTGCAATCCTACGTAAGAGGGTGGCTACCGAAGCCGTCAACCATTCCTTACATTGTGGATTACTCTGCTGACTTCACCGTGCCAAGTGACTTTGGAAGCCCTGGTGCTGTTCTCATTACCAATCTTCATGGCAAGGAGTTCCACCTATTGGAGATCATCCTTCATGGCTTCAATGAAGGGCCCATTTTCTTCCCCGCAAACACATGGATTCATTCCCGGAATGACAACCCTGAAAGTAGAATCATATTCAAGAACCAAGCATATTTACCGTCACAAACACCAGCAGGTATCAAAGATCTCCGACGCGAGGACTTGCTAAGCATAAGGGGGAGTACCCACCAGGAGAGGCAAAGAAAGCCACATGATAGAATCTATGATTATGCTACTTACAATGATCTGGGCAAGCCTGATAAGGATGAGGAACTTGCTAGGCCAGTCCTTGGGGATCGACTGTCTGAGACCAGAATTGAGAAGCCCCATCCTGTTTATGTGCCACGTGATGAGACTTTTGAAGAAATCAAGCAGAACACTTTCTCTGCGGGGAGATTGAAATCTCTGTTCCACAATCTTATACCCTCAATCGCAGCCACTCTGTCGAGTTCAGATATTTCTTTCAAGTGTTTCTCGGAAATTGACAAGCTTTACATTGATGGTGTTCTCTTGAGAGATGAAGAGCACAAAGGGGTAGTGGAAAGTCTCTTAGTGGGAAAGGTAATGAAACAGGTCCTCAGTGCTGGAGAGCGATTGTTGAAATATGAAATCCCTGCGGTTATAAAAGGAGATAAATTTTCTTGGTTGCGGGAAAATGAATTTGCAAGGCAGGCCTTAGCTGGGGTCAATCCAGTGAATATTGAGCTGTTGAAGGAATTTCCCATCCGCAGCAAACTAGATCCTGCTGTCTATGGCCCTCCTGAATCAGCAATAACAAAGGAACTACTAGAGCAAGAACTTGGTGGAATGAGTTTGGAACAGGCTATGGAGGAGAAAAGACTATTTATTCTCGATTACCATGACATGCTTTTGCCATTCATCAAGAAGATGAACTCCTTACCTGGGAGGAAAGCTTATGCCTCTCGGACAATTCTCTTCAATACAAAGACTGACATTCTGCGTCCTATAGCNATTGAGCTTTCACTTCCTCAAACCCCATCTTCCCCACGAAATAAAAGAGTTTACACACATGGCCATGATGCCACAACACACTGGATTTGGAAGTTAGCAAAGGCTCATGCTTGCTCAAATGATGCTGGCGTCCATCAACTAGTAAATCATTGGTTAAGGANTCATGCATGCATGGAGCCTTATATAATTGCTACTCATAGACAGCTAAGCTCAATGCATCCCATTTACAAGTTGCTACATCCTCATATGCGCTATACGTTGGAAATTAATGCAATTGCTAGGCAAAATCTAATCAATGGAGGGGGTATCATTGAGGCATCTTTCAGTCCAGGAAAATATGCNATGGAGCTTAGTTCTGCAGCTTACAAGGACATGTGGCGATTTGATATGGAGGGCATGGCAGTAGAAGACCCTTCAATGCCCAGTGGTGTAAAACTTGTGCTTGATGACTACCCTTATGCTGCAGATGGACTCCTAATCTGGTCTGCCATTAAAGAATGGGTAGAATCCTATGTTGAACGCTTTTACTCCGACCCAAGTTCTGTCACATCCGATGTGGAGCTCCAAGCATGGTGGAGTGAAATCAAGTGTAAGGGTCACTGTGACAAAAGGAATGAGCCCTGGTGGCCTAAACTTGAAACCAAAGAGGACCTATCTGGCATACTCACCTCAATGATATGGGTTGCTTCAGGGCAACATGCTGCCATAAATTTTGGACAATATCCCTTTGGAGGGTATGTGCCTAACCGTCCTACCCTCATGAGAAAACTCATCCCCCAAGAAAGTGATCCTGATTATGAGAAGTTCATTCAAAATCCTCAGCTTGTTTTCCTATCATCACTGCCTACTCAACTTCAAGCTACCAAAGTGATGGCTGTTCAGGACACACTGTCCACACATTCCCCAGACGAAGAGTATTTGGGTCAAGTGAATCACCTGCATGCTCATTGGATCAATGATCATGAAATCCNGAGATTGTTTAATAGATTCTCTGCTAGATTGGAAGAGATAGAGGAAATAATAAATGCAAGAAATAAGGACCCCCGTTTGAAAAACAGAAGTGGTGCAGGGGTCCCTCCCTATGAACTGTTGCTTCGCTCATCAAGACCAGGGGTAACTGGTCGTGGAATCCCCAACAGCGTATCTATATGATCAGTTTAGATTGCATTGGCATGATCGCTTGTTACTTATTATTATATCTGATCCGATACACTATCTTATTGGCAGAAACCGTGTATATGCTGGGGGTAAGAATACATGTTTTTAATTTTATGGATGCCCATATTGATGTACCCATCTTTGCCCTCGTCGCTTCCTGGGTTGTGTTTTGATCATATACATGGAGTTACAACACAATTCTTTGTATTGTTTGGTGGACAATAAATAACACAAACAAAATAATATAATTAGAATTGTACTACCCTTTGTATTATGCAATATTTATTTCAAACAGAACATTGTTATATGACAGAGTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00355	88616	94444	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000355s00013938.1	PF01477.18	PLAT	155	218	5.30E-07
Glyur000355s00013938.1	PF00305.14	Lipoxygenase	231	875	4.00E-232

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.393
SRR1783600	control	43.562
SRR1783602	moderate drought stress	43.847
SRR1811619	moderate drought stress	43.285

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.830
DRR006520	Root Summer glycyrrhizin high producing strain	13.756
DRR006521	Root Winter glycyrrhizin high producing strain	14.420
DRR006522	Root Winter glycyrrhizin high producing strain	13.824
DRR006523	Root Summer glycyrrhizin low producing strain	17.306
DRR006524	Root Summer glycyrrhizin low producing strain	17.181
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.500
DRR006526	Leaf Summer glycyrrhizin high producing strain	58.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.691
SRR2868004	Drought Stress (root)	54.476
SRR2967015	Control (root)	47.610

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.023
SRR9715740	Leaf	29.136
SRR9715741	Leaf	59.524
SRR9715739	Root	17.149
SRR9715742	Root	38.925
SRR9715743	Root	34.063

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.535
SRR8749028	MeJA induced 9h	62.276
SRR8749029	MeJA induced 9h	38.134
SRR8749030	Uninduced	62.115
SRR8749031	Uninduced	53.687
SRR8749032	Uninduced	36.846

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.244
SRR8400027	Control - Root	41.211