Gene detail

Gene detail information of Glyur000355s00013933.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27900.1	0	RNA helicase family protein
NR	XP_003524885.1	0	PREDICTED: ATP-dependent RNA helicase dhx8-like isoform X1 [Glycine max]
COG	YP_008153931.1	1.00E-118	ATP-dependent helicase [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q38953\|DHX8_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|K7KQA5\|K7KQA5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G27850.2}

Sequence

Transcript Sequence

>Glyur000355s00013933.1
ATGGCAACCCTTCCCATAGTCCAATACGAAGAAAAGATCATCGAAACCGTAGAGCACAACCCCGTTGTCGTCATCATCGGAGAGACCGGTTCCGGCAAGAGCACTCAACTCTCTCAGATGCTCCACCGCCGCGGTCACGCCAAAATCGCCGTCACTCAGCCCCGTCGAGTCGCCGCCGTCACCGTCGCCAGGCGAGTTGCGCATGAGCTTGGTGTTCCGCTTGGAGAGGAAGTAGGGTACGCCATTCGATTTGAGGACAGGACTTCACACAACACGCGCATAAAGTACCTTACTGATGGGGTTCTCCTCCGCGAAAGTCTAGCTGATCCAGAGCTAAACGAGTATTCTGTCATCATATTGGATGAAGCTCATGAACGCAGCTTGAACACGGATATTTTGATGGGGCTGATGAAGCGCTTGGTTAAACTTCGTTCCTCCAATCTCAAAGTGTTGATCACCTCCGCCACTCTTGATGGTGATAAGGTGTCGAACTTCTTCGGAGATTGTCCCGTGTTGACCGTACCGGGGAAGATGTATCCCGTCGAGGTTCTTTATAGCAAGGAACGTCCCTCAAACTATCTCGAGTCTTCTCTCAAAACAGCTCTTGATATACATGTTCGTGAACCAGAAGGGGATGTTTTAATATTCATGACTGGACAGGATGACATAGAGAAGTTGGTATCTAAGTTGGAAGATAAAGTGCGTGTATTTAGTCCTCCACCTCCAAATTGCAGACGAATTATTGTTGCGACAAATATTGCTGAAACTTCTTTGACTGTTGATGGTGTAGTGTATGTTATTGATTCTGGGTATGTCAAGCAAAGGCAGTACAATCCATCCAGCGGGATGTATTCTCTTGATGTTGTTCAAATTAGCAAGGTGCAAGCTAATCAGCGTGCAGGCCGAGCTGGACGAACACGACCTGGGAAATGCTATCGTCTATATCCTTCCCAAGTCTACCATGATGAGTTTTTGGATGTTACAGTTCCTGAGATTCAGAGATCTTCTCTCGCAGGCAGTGTTCTTTACTTGAAGTCATTGGACCTCCCTGATATTGACATTCTCAAATTTAACTTTCTTGATCCTCCATCATCTGAGTCCTTACAAGATGCCTTGAAGCAATTATATCTGATTGATGCTATTGATGAAAATGGTGCAGTTACAAGTATTGGACGAAAAATGGCTGAGCTTCCATTAGAACCATCCCTATCAAGAACTTTGATGGAGGCAAACAATTATGGTTGCATAACTGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTACATTGCTACCGGGGCAGAGCAAGACTGACAAAAAGAGGAAACACCCGGTATCTAACCTTCCTGATGGTTCTGGCCTGGGAGATCACATCCAATTACTGCAGATATATGAGTGTTGGCATCAAACTGGTTATGACATTGGTTGGTGTAAAGACAATGGCTTGCAGGTGCGAGGAATGTCGTTTGTCAGAGATGTCCGTAAGCAGTTAGCTCAGATAATGCAGAAAATTGCTAAGGGACCGCTGGATATAAGGGCAGATGGGAAAGGGGAAGAGTTCCGAAAGGATTATCGAAATTTGAGGAAGGCTCTATGTGTGGGCTATGCAAGTCAGCTGGCTGAAAGAAAGATGCATCATAATGGTTATCGAACTCTAGGTTTCCAATCCCAAGTAGTACAGGTGCATCCATCTTCTGCGTTGAGGGCTGATGAACTGGGGAAGTTCCCAGACTATGTTGTGTACCATGAGTTAATTGCAACTCCACGGCCGTTCATGAGAAATGTGTGTTCTGTTGAGATGAGATGGGTTATACCCATCACCAACAAGCTTAAGACCCTAGATGTGTACAAATTAAGTGGTGGTATTGATCATGTTGAGGAGGAATCTGAGAAAAATCTTCCAGATTTGCCAAAGAAGAATGTTGAGGTTGCTGTTGTTGCTGATGACCGTGAAAGTAGAATCCAAGCTGCCAGAGAACGATTTCTTGCTCGTAAAGCCAAGAAATGAGCACTGATATTACCTGTGGAGATGATGATGTGGCTTGTTGGGCATTTTTGTTAGTGGGANGGACTAGTTGGTAAGTTACCTGAAAGAATGGAGAGTCGTGATGAGCTGATACTTCGAGTTTTCCACATTGTCTCATTCCAGTTTTGTGCTCTGATGTTATCTCAGCTTCATCATCATGCAATTATCTCTTGCAAACATCCGAAGTTTTAGCTCAGAACACCTGAGATTGGGCGTTGTACCATTTTGATGGTTAATTGAGTGGCTGAATGTATATATACTTTTTTCGTTATGCTCTTGGTTATTGAAATGTACCCGGAGTGGAGAAAGAAGACAAAGGAAATGGAGGGAAAAGCGAGAGAACACCAGCAAGTCCCCTTGACAAGTAAATTTAAGCAATTGAGGGGTTTGGAAATGCAATTGTGGCTACGGACTTCAGATTGAGGTAATTTAAAGTGGCACTTTTGCCAAAAAGTTTAGTTACTTTTTTGTTTGATATTGAGCCCGTTTAGATTGAGATAATTACCTAGCTGAGATTGTNTTTGAAGTTAAAAGTTATAAAAGAAAATAGTTAGGTATATGAAGCAAGATCAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00355	63281	73634	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K12818	DHX8, PRP22	EC:3.6.4.13	Spliceosome	map03040

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004386 helicase activity

GO:0005524 ATP binding

GO:0008026 ATP-dependent helicase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000355s00013933.1	PF00270.24	DEAD	11	163	1.00E-06
Glyur000355s00013933.1	PF00271.26	Helicase_C	243	306	4.50E-08
Glyur000355s00013933.1	PF04408.18	HA2	371	463	2.80E-21
Glyur000355s00013933.1	PF07717.11	OB_NTP_bind	497	610	7.50E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.177
SRR1783600	control	12.164
SRR1783602	moderate drought stress	21.072
SRR1811619	moderate drought stress	21.205

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.888
DRR006520	Root Summer glycyrrhizin high producing strain	14.388
DRR006521	Root Winter glycyrrhizin high producing strain	17.280
DRR006522	Root Winter glycyrrhizin high producing strain	17.309
DRR006523	Root Summer glycyrrhizin low producing strain	16.957
DRR006524	Root Summer glycyrrhizin low producing strain	16.575
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.538

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.045
SRR2868004	Drought Stress (root)	19.438
SRR2967015	Control (root)	21.309

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.121
SRR9715740	Leaf	14.834
SRR9715741	Leaf	12.983
SRR9715739	Root	5.205
SRR9715742	Root	11.683
SRR9715743	Root	11.021

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.595
SRR8749028	MeJA induced 9h	10.031
SRR8749029	MeJA induced 9h	7.029
SRR8749030	Uninduced	4.685
SRR8749031	Uninduced	4.115
SRR8749032	Uninduced	3.557

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.772
SRR8400027	Control - Root	18.806