Gene detail

Gene detail information of Glyur000355s00013931

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G24330.1	0	ARM repeat superfamily protein
NR	KEH20567.1	0	plant U-box protein [Medicago truncatula]
COG	YP_001957542.1	1.00E-12	hypothetical protein Aasi_0393 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|O48700\|PUB6_ARATH	0	U-box domain-containing protein 6
trEMBL	tr\|A0A072TT17\|A0A072TT17_MEDTR	0	Plant U-box protein {ECO:0000313\|EMBL:KEH20567.1}

Sequence

Transcript Sequence

>Glyur000355s00013931.1
CCCCCCGAAAAATAAAATATAAAATAAAATTAGAATTGACACTTCCATTTTAACTTCCAATTAACTAAACAAAAAATTATTTAATTTATTTTCTTACAATCTCACACTAGAATAACCAAATCTCCACCTCCCTCCCCTTACACAGTAGACACTACCACCTTGCGTGTGCGAGTGCTCCCCGATACTCACTCTCCGATTCGGAACCTCAAAACCTGCTTCTTACAAAACTATAGATTTTCTGAACCCTAATTCTTCGATTCTACAAGCATCTAATATTTTTCATGAAGCCTCCTTGGCTGTGATATGCTTTTTTTTTTGGCTTGGATNTAGTAGCTTAAATATTTGAGATCATTTAGCGCCTAAGTTTACACGGACAGTGAATGTGAATGATGGATGTCGCTGAGGTTGAAGAAAATCTATTTGCTGTCAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATTATATATTGCAAAGTATTGTCAGTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGAAGTAAAACAGGAATTCAGGCATTATGTTCCTTGCATGTAGCCTTAGAGAAGGCCAAGAATGTTCTTCAACATTGCTCAGATTGTAGTAAACTTTACTTGGCTGTAACTGGGGATTCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCCCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCCATCGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGCAAGTGTGGAATTTGCACTTGACCCATTAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTCCAGCAGGGGAAAAGGTTTGATGACTCCAGTGAAAGTAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCGTCAAGAGCAGCTCTTACAGAAAGAAGAGCTCTCAAAAAACTTGTAGAAAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTGTAGCATATCTTTTGCATCTTATGAGGAAATACTCCAAGTTATTCAGAAACGANTTCTCAGATGACAATGATTCTCAGGGGTCTGCTCCTTGTTCTCCCACTGTTCAGGGATCTATTGAGGATGGTGTTCCTGGTGGTCACTGTCAGGCTTTTGACAGACAGCTTTCAAAGCTTAGTTCCTTTAATTTCAAGCAAAATAAAAACAGGGAGTCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGACAAACATATGAAAGGGCTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACAAAACAGAAACTTCCACATCTTTATTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTTGTTGGTGTGAACAAAATGGAGTCCCTATTCCTGAAGGCCCTCCTGAATCTTTTGATCTTAACTACTGGAGGTTTGTATTATCAGAGTCTGAGTCTGCAAATTCAAGATCTGTAAATAGTGTTAGCTCTTGCAGGTTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGAGTGGTATCTCAGAGGAATGTGGGGAAAATGGAGCTGAAAGTGTGTCTGCACAAGAGGAAGACACTGAGCAGTATTTTAGTTTTCTGAAAGTATTGACTGAGGGGAACAATTGGAAAAGGAAATGTGAAGTGGTAGAGCATTTAAGGCTGTTACTGAAGGATGATGAAGAAACCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTCTGCAGTTTTTACAATCGGCTGTGCATGAAAGGAATTTGATGGCTCAGGAAAGCGGAACAATGGCTCTCTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATCATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCCGGCACTAGTTCTTCTTATGGTTGTGCAACTGCTCTATATGCAAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTACCNTTCCTAATCCAGCTTCTTCAATCTAACTATGACGTCCAATGCAACCAAGATTCTCTCCATGCGCTCTATAATCTTTCTACTGTGCCCTCCAATATTCCATACTTACTTTCATCTGGCATTATTAATGGCCTACAATCCCTTCTTGTAAGCCAGGGTGATTGCACATGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCTACTTCTCAAGTCGGAAGGGAGGAAATGGTATCAACTCCTGGCCTCATNAGTGCATTGGCTTCGATAGTGGACACCGGTGAGCTCTTAGTGCAGGAGCAAGCTGTTTCTTGTCTCCTAATTTTGTGTAACAGAAGTGAGCAATGTAGTGAGATCGTCCTGCAAGAAGGGGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACCCCAAGAGGGAGAGAAAAGGCTCAGAAACTCTTAATGTTGTTCCGAGAGCAGCGACAACGAGACCATTCACCAGTTAGGGCACATCAGAGCCCACCTGAAAGTAGTGATTTGTCTGTGCCACCCGCCGAAATGAAACCGCCTTGTAAGTCGATGTCTAGAAAGACGGGAAAGGCTCTTAGCTTTTTCTGGAGAAGCAAGAGCTATTCTGTTTACCAGTGTTAAGTTCTATGGGTTGTAAATCTCTTATCTCTCTCTGTTAGCATCTTTACTTTTCCGGCCCTGCTTTTATCCTCGTCTTCTTCCTGTTTCCGTGGGTGTTACTTACGTTTTGGTTTCCAAAGCGAAGAAGAGATGTACAGGCCTGTGTAATATATGGATTTTGTTTTCTTCTTTCGCTTTCCTCTGTAACATCAACCTCTCCAATCCAAGTGTTAGATTTTCATTTTTGAAGTTGAGGTAAATGTGAATTATGTCATGGTGGAAGCTAACTAGTATGTTCAGTCAAGTTCTGTTAGTTTGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00355	55072	60032	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000355s00013931.1	PF04564.10	U-box	282	351	1.20E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.426
SRR1783600	control	22.579
SRR1783602	moderate drought stress	37.522
SRR1811619	moderate drought stress	37.403

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.655
DRR006520	Root Summer glycyrrhizin high producing strain	39.231
DRR006521	Root Winter glycyrrhizin high producing strain	37.450
DRR006522	Root Winter glycyrrhizin high producing strain	36.673
DRR006523	Root Summer glycyrrhizin low producing strain	32.871
DRR006524	Root Summer glycyrrhizin low producing strain	32.509
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.396

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.889
SRR2868004	Drought Stress (root)	35.458
SRR2967015	Control (root)	36.987

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.072
SRR9715740	Leaf	39.602
SRR9715741	Leaf	38.834
SRR9715739	Root	20.975
SRR9715742	Root	37.095
SRR9715743	Root	34.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.468
SRR8749028	MeJA induced 9h	16.930
SRR8749029	MeJA induced 9h	20.608
SRR8749030	Uninduced	12.654
SRR8749031	Uninduced	11.336
SRR8749032	Uninduced	14.081

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.876
SRR8400027	Control - Root	43.315