Gene detail

Gene detail information of Glyur000355s00013930.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67490.1	0	glucosidase 1
NR	KEH20582.1	0	mannosyl-oligosaccharide glucosidase [Medicago truncatula]
COG	YP_001540832.1	2.00E-09	glycoside hydrolase [Caldivirga maquilingensis IC-167]
Swissprot	tr\|F4HTM3\|GCS1_ARATH	0	Mannosyl-oligosaccharide glucosidase GCS1
trEMBL	tr\|A0A072TT32\|A0A072TT32_MEDTR	0	Mannosyl-oligosaccharide glucosidase {ECO:0000313\|EMBL:KEH20582.1}

Sequence

Transcript Sequence

>Glyur000355s00013930.1
CGGCCCAAACTGATAACATTTTTTTACTCNGAAAAAAATATCTCCGCCGTCTCCCGAACTGTTCTACTGCGATTCACACTTGCAGCACTGCAAAGTGCAAAGTGCAAACACACTCGTTTTGGCGTGACCCCACACACGCACGACTCATTCACTACGCAAACACTCCCTTCACTTATTAATAAGCTTTTTCAAATTCAAAATCCTATGTGGCGCCGTTAGTTGCCGTCGATCCTCCGCCAGAAATGACCGGAAGTGGAAGAAGAACCACCGCTCGGAGTAGAGTCCGATCCTCCTCCGATGCCGACGCCGATCCTCTCCATGAAAGGAGGCCTAGGTTTAACCGCCACAGGGACAGGAGCAAATACGGAAGCTCCATTCCGTTATTCACCAACGCCAATCTCAAAGTTGTGCTCGGATTCACCTTCATCGCATTCTTCACCATCTTGTTTCTGATTCGCCACCTAGTCAATTCCGCCGCCGAACCTCATCTGCCTCGCGCCGTTACGCCGTTTCCCGCGCCGAAGATAATGGACCTTCCTCAGTTTCAAGGTGAACACAAGGAGAGTTTGTATTGGGGAACTTATCGTCCCCATCTATATCTTGGAATTCGTGCCAGGACTCCACAATCTTTGATGGCTGGATTAATGTGGATCGGTGTGAAGGATGGCAGATATCACCTGAGGCATGTTTGCAGACTTGAGGATGACCTAAGTACTTATGGTTGGATAAAGCATAATGGACGTGATTTTGGGCATCAAGTACTGGTTGACCATGGCATGACCTTGGCTACCGATTTTTTAAAATCAAAGGGGGATGGCAGCGGTTATGGAGGGGACTGGGCAGTTCGAATTGGTGTGCAGATTGATAAGTCAAAGTGGAATGAGGAATTTGGGAGAGGTGCCCAGCTCTTTTTCTATTTGGCTGATGAAAGTGGGAATGCTCTAGATGTAAGTGGAGAAAACTTGAACATTCGTGAGAATTCTTTACTTGCATCTGGCTCTCGAAAGGACATTGGAGATTGGCAGCTACATTTAAAATCAACGATAATTGGCGGCTTTCCTTTCACAACAGATATTGTACTCATCTCTGGAACTGATTTAGAAAGTTCAAGAGTAGAAGAGCGTGTCAATAGTCTTACAGGCACCTCACTGTCCAATGAACTGAAATATAAAGAACAAGCATTTGATGAAAAGTTTGAGAAAATTTTCAATTTGGCTGAGAAGGTGGATTCCGAATCCATTTCCGTTGGTAAGGCTGCTGTCGGAAACTTGCTAGGTGGCATTGGCTACTCCTATGGACAGTCAAAAATTGCTCTGTCAAGAACCCTTAATCNTAGAGAACATGTTAATTATGTATCATATTGGCCTGCTGAGCTTTNCACAGCTGTACCAAGTCGGTCGGTCTTTCCAAGAGGATTTCTATGGGATGAAGGTTTTCATCAACTTCTAGTCTGGCGTTGGGATATTCATATTTCGCTGGATATCATTGGACACTGGTTAGATTTGATGAATGTTGATGGATGGATACCACGGGAACAAATTCTGGGGACTGAAGCACTGAGTCGGGTCCCAGAGGAATTTGTTCCTCAGCTTCCAACAAATGCAAATCCTCCAACTCTGTTTTTAGCATTAAGTGACATAATTAATGGCTTGATGAACAATGAGTTTACTGCAATGGATAGAAGTGAGATCACTGTGTTCCTAGAACGTGCCTTTGTTCGATTGGAAGCATGGTTCCAATGGTTCAATACAACTCAGTNAGGGAAACAAATGAGCAGCTACTATTGGCATGGACGGAACAACAGAACAATACGTGAATTAAATCCCCAGACGCTGTCCTCTGGATTTGATGATTATCCACGTGCTTCACACCCAAGTGCAGATGAACGCCACGTGGATCTTAGGTGTTGGATGTTACTTGCAGCAGATTGTATGCATTCCATTGAGAAGTTTTTGGATAAGGAAACCAAACCTGACAAGAATTATGGTTCTCTTGCAAAATTGCTATCAGATCATGAGTTACTGAACCAGATGCATTTTGATGATGCATATGGTGCTTACTTTGATTTTGGAAATCATACAGAAAAGGTTCAACTTAAATGGAAAGAAATGGAGGCAGGACAAAATTATGCTGCTCGCCAGCTAGTCCGGGATGTTTTGGAAAGGCCTGTATTAAGATTGGTTCCTCACATTGGTTATGTTAGTTTGTTCCCATTCATGGGGAGAATCATTCCACCTGGATCATGGATTCTGGAAAAGCAGCTTGAACTCATTTCAAATAACAGCCTCTTATGGACTGACTATGGACTACGTTCTCTTGCCAAAACAAGTTCCTTGTACATGAAACGCAACACAGAGCACGATGCTCCATATTGGAGAGGTTCAATTTGGATAAACATGAATTACANAATTCTTTCAGCGCTCCACCATTATTCCAAAGAGAATGGGCCATATCAGGACAGAGCTAAAGCTATCTACAAAGAATTGAGAAGCAATTTAATTAGAAATATAGTACGCAATTATCAACAGACTGGATTTATTTGGGAACAGTACGATCAGATTAAGGGCGAGGGAAAAGGGGCACATCCATTTACGGGCTGGACATCGCTTGTAGTATTAATCATGGCGGAAGCATACGACACAATTTAGGATAAACACTGTGGAGACTATATTATGACGCACACCGAGGCTGTAAGTGGCGTGCAACCTTGTTGAAAATCTTTAATTTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00355	37660	46985	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH63

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01228	GCS1	EC:3.2.1.106	N-Glycan biosynthesis	map00510
			Protein processing in endoplasmic reticulum	map04141

Gene Ontology

biological_process
GO:0009311 oligosaccharide metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004573 mannosyl-oligosaccharide glucosidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000355s00013930.1	PF03200.11	Glyco_hydro_63	73	266	1.80E-58
Glyur000355s00013930.1	PF03200.11	Glyco_hydro_63	273	798	5.90E-239

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.584
SRR1783600	control	23.502
SRR1783602	moderate drought stress	19.258
SRR1811619	moderate drought stress	19.094

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.320
DRR006520	Root Summer glycyrrhizin high producing strain	28.529
DRR006521	Root Winter glycyrrhizin high producing strain	31.472
DRR006522	Root Winter glycyrrhizin high producing strain	30.769
DRR006523	Root Summer glycyrrhizin low producing strain	17.454
DRR006524	Root Summer glycyrrhizin low producing strain	17.632
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.308
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.976

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.266
SRR2868004	Drought Stress (root)	57.375
SRR2967015	Control (root)	57.174

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.641
SRR9715740	Leaf	24.065
SRR9715741	Leaf	21.944
SRR9715739	Root	4.423
SRR9715742	Root	19.570
SRR9715743	Root	17.393

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.602
SRR8749028	MeJA induced 9h	41.109
SRR8749029	MeJA induced 9h	37.041
SRR8749030	Uninduced	23.026
SRR8749031	Uninduced	23.285
SRR8749032	Uninduced	15.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.589
SRR8400027	Control - Root	40.405