Gene detail information of Glyur000355s00013925


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G67430.11.00E-76Ribosomal protein L22p/L17e family protein
NRXP_007044055.11.09E-116Ribosomal protein L22p/L17e family protein isoform 2 [Theobroma cacao]
COGYP_004616297.18.00E-2950S ribosomal protein L22 [Methanosalsum zhilinae DSM 4017]
Swissprottr|P51413|RL172_ARATH1.00E-10660S ribosomal protein L17-2
trEMBLtr|A0A061E6A4|A0A061E6A4_THECC4.00E-117Ribosomal protein L22p/L17e family protein isoform 2 {ECO:0000313|EMBL:EOX99886.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold003551488618084+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome

GO:0015934  large ribosomal subunit


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000355s00013925.1PF00237.14Ribosomal_L22211573.50E-34
Glyur000355s00013925.2PF00237.14Ribosomal_L2251412.60E-34


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control483.494
SRR1783600control488.608
SRR1783602moderate drought stress375.407
SRR1811619moderate drought stress374.605

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain466.700
DRR006520Root Summer glycyrrhizin high producing strain461.617
DRR006521Root Winter glycyrrhizin high producing strain269.698
DRR006522Root Winter glycyrrhizin high producing strain264.676
DRR006523Root Summer glycyrrhizin low producing strain360.552
DRR006524Root Summer glycyrrhizin low producing strain362.646
DRR006525Leaf Summer glycyrrhizin high producing strain194.465
DRR006526Leaf Summer glycyrrhizin high producing strain196.132

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)575.163
SRR2868004Drought Stress (root)336.608
SRR2967015Control (root)305.590

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf176.747
SRR9715740Leaf164.391
SRR9715741Leaf144.662
SRR9715739Root132.416
SRR9715742Root156.807
SRR9715743Root147.793

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h999.343
SRR8749028MeJA induced 9h286.805
SRR8749029MeJA induced 9h614.908
SRR8749030Uninduced90.561
SRR8749031Uninduced80.464
SRR8749032Uninduced143.208

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root332.695
SRR8400027Control - Root273.701

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved