Gene detail information of Glyur000354s00015210 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27745.1 | 2.00E-44 | Yippee family putative zinc-binding protein |
| NR | XP_003536177.1 | 6.37E-64 | PREDICTED: protein yippee-like At4g27745-like [Glycine max] |
| Swissprot | tr|Q9T096|YIPL6_ARATH | 2.00E-56 | Protein yippee-like At4g27745 |
| trEMBL | tr|I1LBY5|I1LBY5_SOYBN | 2.00E-64 | Protein yippee-like {ECO:0000256|RuleBase:RU110713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00354 | 171325 | 172860 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000354s00015210.1 | PF03226.9 | Yippee-Mis18 | 10 | 101 | 2.30E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.130 |
| SRR1783600 | control | 15.268 |
| SRR1783602 | moderate drought stress | 12.480 |
| SRR1811619 | moderate drought stress | 12.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 28.044 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.617 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.076 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.534 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 26.869 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 27.640 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.061 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.761 |
| SRR2868004 | Drought Stress (root) | 30.735 |
| SRR2967015 | Control (root) | 27.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.910 |
| SRR9715740 | Leaf | 3.936 |
| SRR9715741 | Leaf | 3.985 |
| SRR9715739 | Root | 8.582 |
| SRR9715742 | Root | 7.340 |
| SRR9715743 | Root | 8.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.560 |
| SRR8749028 | MeJA induced 9h | 8.744 |
| SRR8749029 | MeJA induced 9h | 10.061 |
| SRR8749030 | Uninduced | 3.271 |
| SRR8749031 | Uninduced | 2.461 |
| SRR8749032 | Uninduced | 2.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.189 |
| SRR8400027 | Control - Root | 39.172 |