Gene detail

Gene detail information of Glyur000354s00015202

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G73390.3	Endosomal targeting BRO1-like domain-containing protein
NR	XP_004495492.1	PREDICTED: uncharacterized protein LOC101515213 isoform X1 [Cicer arietinum]
trEMBL	tr\|A0A072VNC3\|A0A072VNC3_MEDTR	Endosomal targeting BRO1-like domain protein {ECO:0000313\|EMBL:KEH42883.1}

Sequence

Transcript Sequence

>Glyur000354s00015202.1
ATGGGCGCCATATACTCCATATCTGTTAAGGAGAATAGCAGTACTTTTGACTTCACCAGTGACCTGCCAGAGCAAAGGACAAGGGACATGGGNTGCATCGTGTCCACTCCAAAGGATTCTGGTGGAAATAGAAGGAGGCCAGGGAGTATTGGGGAAGTTTCTGTCTATGTTCCCGGTCTAAGAATTCCTAAACCTGTTGATTTTACACAGTCACTTGGTGATTACTTGTCCAAGAACATAGTGGAACGCCTATCGGCTCTTAGAACTCGTATAGTTGTAATGGCTGCCCAAGAAGGTCCTACAATTACAAGAACAAAAAGAAAAAGTGCCACCCAACATGGAGGTTCAACACTGGCTGATCTTCTGCAGGCTCTTGAGGACTACTTGCCAGTACTTTTGGGATTGGTCAAAGATGGAAGCCATTTACAATACAAAGTACAATTTGTTTGGGTGAATCAGGAGGATGATGCAGAGGAAACAGCCATGTCTAATGCTTGGTATGAAGTGTTGTCAGTCTTGCACTTGATGGCAATGCTATCACTATCACAGGCTAATTTATTACTTCTTCCAAGAACATCCAGTGATGGTTATCAGTCGAAAGTATCAGAAGAAAACAGACGAGCTTCTGTTGATATCTTCTTAAAGTCAGCTGGGTATCTTGACTGTGCTGTTAGGCATGTTCTTCCACAGTTGCCTGCTGAGCTCAGGAGAAATTTACCAGTAGACCTTGCAGAAGGAGTTCTTCGGGCACTCTGTCTACAAGCATTGGGACTGGGTGTGGATATCCAACTTGGAATGGCAATTGATAGTACCAAAGCCACTCTTGCAGTGAAGCGTAGACTTGCATGTGAGATGGTGAAATATTGGCAACAGGCTCAAGATAATATCATGAACCTTCCATTAGCAAATGGTTGGGGTGAAAAACATCATCTTTATGTGAAATGGAAGTATGTTGAAGCAAAGGCTGCGGCATATTATTATCATGGTTTGATTCTTGATGAGGGAAATACAGAGAAATCTCATGGGATGGCTGTAGCTGCTTTGCAAGCAGCAGATGAGTATTTCAAAGAAAGTAAGAAGTTTTGTGAGGCATTCAATGCAGCACCTCCATTGTCAAGAAATCCACCACTTTGGGGTACCATGAAATATCTCTCTGAGAAAATTCCCAAGGATACTTCAAGCAAGGTGCGAATAAACCGTGATCTATACTCTCATGAGAGAATCATGGAGACAGCACCAACATTGCCTGATTTTGCGTTGGCCTTGAAACCAGATGAATATCAACTTCCCTCAGTGAGTCCCTCTTGGAGAACAGAAAATGTGAATGGGGGACAAACTGGTGCCCCCAACCATGTCAAGGGATGATGACAAAATCACAAAACCTTATCAACTTGTGGACCTCAGAAATGTGAACTTAGCTGGAAGAAGCAACAAGGGTGATGATTTTTCAATGCTTGTCAACAGGGGAAGACTATTTCTGATTCTCTCTCTCTCTCTCTCTACCCTTTGCCTTTTTTCTTCATAAATCAATTTCCTCCCATCCTCCACAACATTTATAAAAAAAAAAAAAAAAGGCCTGCAATTGGAAAGAGTCTCAAGTTGTGTTCAATGTAAACTGTCTAAAGAAAGGGTTTCCTTGCCAATACCCAAATCCTCCATTTGTTAAACCGGGTTGTATAAGTGATCGTGTGTAAAATTGACTTGTGCTTTGCAGAGAAAGAATGATTTCCTTCAAGAAGTGTTGAAATTCGAAAGAATTTGATATGCAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00354	119172	126408	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000354s00015202.1	PF03097.13	BRO1	56	410	2.80E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.352
SRR1783600	control	13.471
SRR1783602	moderate drought stress	25.811
SRR1811619	moderate drought stress	25.662

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.005
DRR006520	Root Summer glycyrrhizin high producing strain	22.343
DRR006521	Root Winter glycyrrhizin high producing strain	46.529
DRR006522	Root Winter glycyrrhizin high producing strain	43.480
DRR006523	Root Summer glycyrrhizin low producing strain	21.180
DRR006524	Root Summer glycyrrhizin low producing strain	21.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.350
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.884

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.777
SRR2868004	Drought Stress (root)	70.902
SRR2967015	Control (root)	47.592

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.739
SRR9715740	Leaf	36.763
SRR9715741	Leaf	29.163
SRR9715739	Root	6.373
SRR9715742	Root	17.261
SRR9715743	Root	17.593

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.474
SRR8749028	MeJA induced 9h	20.484
SRR8749029	MeJA induced 9h	11.824
SRR8749030	Uninduced	33.399
SRR8749031	Uninduced	12.946
SRR8749032	Uninduced	16.370

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.825
SRR8400027	Control - Root	38.030