Gene detail information of Glyur000354s00015199 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36970.1 | 7.00E-50 | NDR1/HIN1-like 25 |
| NR | XP_007161568.1 | 5.11E-145 | hypothetical protein PHAVU_001G080500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 4.00E-15 | Protein YLS9 |
| trEMBL | tr|V7CTP7|V7CTP7_PHAVU | 2.00E-145 | Uncharacterized protein {ECO:0000313|EMBL:ESW33562.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00354 | 110657 | 111421 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000354s00015199.1 | PF03168.8 | LEA_2 | 127 | 215 | 1.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.749 |
| SRR1783600 | control | 3.835 |
| SRR1783602 | moderate drought stress | 2.533 |
| SRR1811619 | moderate drought stress | 2.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.142 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.120 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.292 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.259 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.289 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.289 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.008 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.869 |
| SRR2868004 | Drought Stress (root) | 5.320 |
| SRR2967015 | Control (root) | 4.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.515 |
| SRR9715740 | Leaf | 0.985 |
| SRR9715741 | Leaf | 0.657 |
| SRR9715739 | Root | 8.359 |
| SRR9715742 | Root | 2.205 |
| SRR9715743 | Root | 4.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.514 |
| SRR8749028 | MeJA induced 9h | 0.699 |
| SRR8749029 | MeJA induced 9h | 0.217 |
| SRR8749030 | Uninduced | 0.250 |
| SRR8749031 | Uninduced | 0.100 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.912 |
| SRR8400027 | Control - Root | 18.017 |