Gene detail information of Glyur000354s00015187 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10580.1 | 2.00E-91 | Protein of unknown function, DUF599 |
| NR | XP_003622377.1 | 3.40E-150 | hypothetical protein MTR_7g035200 [Medicago truncatula] |
| COG | YP_004371043.1 | 1.00E-34 | hypothetical protein Desac_2033 [Desulfobacca acetoxidans DSM 11109] |
| trEMBL | tr|A0A072VLL2|A0A072VLL2_MEDTR | 1.00E-150 | Plant/F12B17-70 protein {ECO:0000313|EMBL:KEH42859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00354 | 38944 | 42562 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000354s00015187.1 | PF04654.7 | DUF599 | 65 | 269 | 8.00E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.340 |
| SRR1783600 | control | 10.307 |
| SRR1783602 | moderate drought stress | 6.239 |
| SRR1811619 | moderate drought stress | 6.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.620 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.243 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.519 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.635 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.840 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.207 |
| SRR2868004 | Drought Stress (root) | 17.941 |
| SRR2967015 | Control (root) | 13.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.657 |
| SRR9715740 | Leaf | 6.072 |
| SRR9715741 | Leaf | 6.070 |
| SRR9715739 | Root | 1.970 |
| SRR9715742 | Root | 9.774 |
| SRR9715743 | Root | 7.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.433 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.099 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.511 |
| SRR8400027 | Control - Root | 6.927 |