Gene detail information of Glyur000354s00015184 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26360.1 | 0 | TCP-1/cpn60 chaperonin family protein |
| NR | AES63823.2 | 0 | TCP-1/cpn60 chaperonin family protein [Medicago truncatula] |
| COG | YP_003902281.1 | 4.00E-98 | thermosome [Vulcanisaeta distributa DSM 14429] |
| Swissprot | tr|Q84WV1|TCPG_ARATH | 0 | T-complex protein 1 subunit gamma {ECO:0000303|PubMed:11599560} |
| trEMBL | tr|G7IPS8|G7IPS8_MEDTR | 0 | T-complex protein 1 subunit gamma {ECO:0000256|RuleBase:RU004191} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00354 | 4343 | 10151 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000354s00015184.1 | PF00118.19 | Cpn60_TCP1 | 2 | 447 | 2.30E-128 |
| Glyur000354s00015184.2 | PF00118.19 | Cpn60_TCP1 | 50 | 543 | 7.90E-152 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.908 |
| SRR1783600 | control | 18.811 |
| SRR1783602 | moderate drought stress | 17.000 |
| SRR1811619 | moderate drought stress | 17.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.953 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.736 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.316 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.416 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.224 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.119 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.847 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.764 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 63.699 |
| SRR2868004 | Drought Stress (root) | 46.714 |
| SRR2967015 | Control (root) | 49.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.022 |
| SRR9715740 | Leaf | 13.636 |
| SRR9715741 | Leaf | 10.426 |
| SRR9715739 | Root | 5.119 |
| SRR9715742 | Root | 12.026 |
| SRR9715743 | Root | 9.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 57.105 |
| SRR8749028 | MeJA induced 9h | 30.972 |
| SRR8749029 | MeJA induced 9h | 38.301 |
| SRR8749030 | Uninduced | 16.490 |
| SRR8749031 | Uninduced | 8.956 |
| SRR8749032 | Uninduced | 10.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.078 |
| SRR8400027 | Control - Root | 24.369 |