Gene detail

Gene detail information of Glyur000354s00015183

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G55620.1	1.00E-132	Translation initiation factor IF6
NR	KHN05017.1	7.48E-175	Eukaryotic translation initiation factor 6-2 [Glycine soja]
COG	YP_008376312.1	4.00E-37	translation initiation factor IF-6 [Halorhabdus tiamatea SARL4B]
Swissprot	tr\|Q9M060\|IF62_ARATH	7.00E-168	Eukaryotic translation initiation factor 6-2 {ECO:0000255\|HAMAP-Rule:MF_03132}
trEMBL	tr\|V7BDL5\|V7BDL5_PHAVU	2.00E-173	Eukaryotic translation initiation factor 6 {ECO:0000256\|HAMAP-Rule:MF_03132}

Sequence

Transcript Sequence

>Glyur000354s00015183.1
GTGGATTCTGAGTGTAAATGTTATCTTTTTATTGACACAGTGTCTCCTCTGTGAGGGGAAATGAGGAGTTTGAACCTTATGTATCCAATACTGCAGTTGGTTCTTTGGGTCAAAGATTTCTGTCATCTCTCTGTCATGGCAACTAGACTTCAGTTTGAGAATTCCTGTGAAGTTGGAGTCTTCTCAAAGCTTACCAATTACTATTGTTTGGTTGCCATTGGAGGTTCTGAAAGCTTCTACAGTGCATTTGAGGCTGAGTTAGCNGATGTTATCCCTGTGGTCAAAACCTCCATTGGCGGCACTCGTATTGTTGGTCGTCTTTGTGTTGGAAACAAGAATGGGCTTCTATTGCCCCATACAACCACAGACCAAGAACTCCAACATTTGAGAAACAGTCTTCCTGATCAAGTTGTTGTTCAGCGCATAGAAGAAAGATTATCTGCTCTGGGAAATTGTATAGCATGTAATGACCATGTGGCCCTCACGCACACTGATCTCGACAGGGAAACGGAGGAGATGATTGCGGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACAATTGCTGGCAATATTCTTGTGGGCAGTTATTGTGCTTTCTCCAACAGAGGTGGTTTGGTGCACCCCCATACTTCCATTGAAGACTTGGATGAACTCTCTACACTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTCANTCGTGGGAGTGAAGTAATAGCTGCTGGCATGACAGTAAATGATTGGACTGCATTTTGTGGTTCAGACACCACTGCAACGGAACTCTCTGTCATTGAGAGTGTTTTTAAGCTGAGGGAAGCCCAGCCTAGTGCCATTGTGGATGAGATGAGGAAATCGCTCATTGATAGCTATGTCTGAGTTTTGGTAATAGTATTCACTTTTCATACGATGTTGTACTGCTTTTTGCCAAGATCTTTTAGTTTGATGATAGTTTCTTTTCTTTCCCGGTAAACAGTTTCTGTGATAGTTTGACTTCTAAAATATGATCGCACAGTTCAATCAAGAATTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00354	776	3851	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042256 mature ribosome assembly

molecular_function
GO:0043022 ribosome binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000354s00015183.1	PF01912.13	eIF-6	29	229	7.40E-83
Glyur000354s00015183.2	PF01912.13	eIF-6	4	204	5.30E-83
Glyur000354s00015183.3	PF01912.13	eIF-6	4	186	3.40E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.128
SRR1783600	control	12.630
SRR1783602	moderate drought stress	10.210
SRR1811619	moderate drought stress	9.647

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.900
DRR006520	Root Summer glycyrrhizin high producing strain	15.769
DRR006521	Root Winter glycyrrhizin high producing strain	2.969
DRR006522	Root Winter glycyrrhizin high producing strain	3.066
DRR006523	Root Summer glycyrrhizin low producing strain	9.536
DRR006524	Root Summer glycyrrhizin low producing strain	11.059
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.545
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.216

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.636
SRR2868004	Drought Stress (root)	31.582
SRR2967015	Control (root)	29.869

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.345
SRR9715740	Leaf	14.283
SRR9715741	Leaf	11.631
SRR9715739	Root	23.963
SRR9715742	Root	11.393
SRR9715743	Root	12.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.873
SRR8749028	MeJA induced 9h	17.163
SRR8749029	MeJA induced 9h	25.769
SRR8749030	Uninduced	9.167
SRR8749031	Uninduced	4.615
SRR8749032	Uninduced	9.484

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.024
SRR8400027	Control - Root	18.638