Gene detail

Gene detail information of Glyur000353s00015554

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G43890.3	6.00E-88	RAB GTPASE HOMOLOG B18
NR	XP_003523225.1	3.53E-125	PREDICTED: ras-related protein RABC1-like isoform X1 [Glycine max]
COG	YP_008431664.1	1.00E-18	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|O23657\|RABC1_ARATH	8.00E-111	Ras-related protein RABC1
trEMBL	tr\|I1JY15\|I1JY15_SOYBN	1.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G39030.1}

Sequence

Transcript Sequence

>Glyur000353s00015554.1
CTCCCACTCCTTTCACCTTTCACTGCTACATTTTTAATCTTCTGATCTAGGAGTACATTATTTTTGGGTCAAAACTTCTAATCTACATTTGTGATGTTTGTTTCATCCAAAAAAAAATTGTGATGTTTATGTTTATGCAAGAAGAGCCGGGGCATGGTCCCCCTATTGGAGCCTCCCAAAAATTGATCCCACAATAAAATTAAAGTCACTATTTTACGACATAAAAGGATTAATATATTGGAAATTATAAATAATTCTTTCCTCCAAAAAAAAATAGAAATAATTCTAAGCGGAAGCTGAAAATAAAAGAAAGAAAAAAGGTGGAACGGCGACCTGGTAATTCGGACATGGATCCTGTTTTTTCTTTTCCATGTTAAAAATTCATCCTGAATTTCCTCTCCTACCAATTCCTATAGGATTTGGTTTTCTTAATTTTTAGTTGATTGCNATGGATTCGAGTTCGAGCCANGAATTCGATTATTTGTTCAAGCTGTTGATGATTGGGGACTCGGGAGTTGGCAAGAGTAGTCTCCTCCTCTGTTTCACCTCTGATACTTTCGATGATCTCTCTCCTACAATTGGTGTTGATTTTAAGGTCAAATATATGACTGTGGATGGTAAAAAGTTGAAGCTTGCCATTTGGGATACAGCTGGTCAGGAGAGATTCAGAACATTGACAAGTTCTTACTACCGAGCTTATGATGTTACTCGGCGAGATACATTTACAAATCTCTCTGAAGTATGGGCTAAGGAAGTAGACCTTTATTCAACAAATCCGGAGTGCATCAAGATGCTTGTTGGAAACAAAGTGGACAAGGAGGGNGATAGAGTTGTGACAAAGAAAGAGGGAATTGACTTTGCCAGGGAATATGGTTGCCTATTTACTGAATGCAGTGCTAAAACTCGAGTTAACGTACAACAATGTTTTGAAGAGCTTGTTTTGAAGATTCTGGATACACCTAGCCTCTTAGCCGAGGGCTCTAAAGGGAAAANGAACATTTTTAAGGANAAGCCATCCTCTGATGCATCCACAAGTAGTTGTTGCTGATAAGAGGCTATTTCACTCAAAACCCACTGCATATGAAGATCTCGAAGAGAAGGGTGTTGNATCCATTTTCAGAATCAGAATTCTAACACAAGTTTATTGGTAATTTAGCNGCTACCGAAGCATTAAAAGAAATAGTAGAATCTAGGCTCGTGATTGATCTAGAATATTTGTAATATGATGATGATGGTTATCTTCTTTTTCTTTTTTTATTTGGATTTTGTTGTTATTATTGAATCGAATCACATTTAATTTCATATATATTATCGTGCAAGAATCCTAGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00353	179954	184637	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000353s00015554.1	PF00071.17	Ras	14	168	6.10E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.103
SRR1783600	control	8.213
SRR1783602	moderate drought stress	5.056
SRR1811619	moderate drought stress	5.144

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.887
DRR006520	Root Summer glycyrrhizin high producing strain	18.235
DRR006521	Root Winter glycyrrhizin high producing strain	10.275
DRR006522	Root Winter glycyrrhizin high producing strain	10.126
DRR006523	Root Summer glycyrrhizin low producing strain	13.373
DRR006524	Root Summer glycyrrhizin low producing strain	13.208
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.509
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	30.800
SRR2868004	Drought Stress (root)	32.757
SRR2967015	Control (root)	26.970

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.903
SRR9715740	Leaf	25.238
SRR9715741	Leaf	24.510
SRR9715739	Root	4.314
SRR9715742	Root	8.957
SRR9715743	Root	8.106

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.986
SRR8749028	MeJA induced 9h	20.907
SRR8749029	MeJA induced 9h	20.646
SRR8749030	Uninduced	26.209
SRR8749031	Uninduced	11.679
SRR8749032	Uninduced	12.801

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.212
SRR8400027	Control - Root	26.176