Gene detail information of Glyur000353s00015552.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33440.1 | 0 | Pectin lyase-like superfamily protein |
| NR | XP_003602622.1 | 0 | Germin-like protein [Medicago truncatula] |
| COG | YP_001179193.1 | 1.00E-55 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 6.00E-133 | Probable polygalacturonase |
| trEMBL | tr|G7JBL3|G7JBL3_MEDTR | 0 | Glycoside hydrolase family 28 protein {ECO:0000313|EMBL:AES72873.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00353 | 174146 | 178528 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000353s00015552.1 | PF00295.12 | Glyco_hydro_28 | 176 | 457 | 5.90E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.898 |
| SRR1783600 | control | 3.941 |
| SRR1783602 | moderate drought stress | 2.701 |
| SRR1811619 | moderate drought stress | 2.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.907 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.087 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.546 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.566 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.872 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.586 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.611 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.710 |
| SRR2868004 | Drought Stress (root) | 13.701 |
| SRR2967015 | Control (root) | 17.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.645 |
| SRR9715740 | Leaf | 1.830 |
| SRR9715741 | Leaf | 3.642 |
| SRR9715739 | Root | 33.412 |
| SRR9715742 | Root | 56.605 |
| SRR9715743 | Root | 48.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.732 |
| SRR8749028 | MeJA induced 9h | 66.851 |
| SRR8749029 | MeJA induced 9h | 57.097 |
| SRR8749030 | Uninduced | 80.656 |
| SRR8749031 | Uninduced | 45.021 |
| SRR8749032 | Uninduced | 41.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.581 |
| SRR8400027 | Control - Root | 16.706 |