Gene detail information of Glyur000353s00015551 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61750.1 | 3.00E-50 | RmlC-like cupins superfamily protein |
| NR | XP_003602622.1 | 2.06E-101 | Germin-like protein [Medicago truncatula] |
| COG | YP_005079325.1 | 5.00E-08 | Bicupin, oxalate decarboxylase/oxidase [Pseudovibrio sp. FO-BEG1] |
| Swissprot | tr|Q2R352|GL111_ORYSJ | 8.00E-62 | Germin-like protein 11-1 (Precursor) |
| trEMBL | tr|G7JBL3|G7JBL3_MEDTR | 8.00E-102 | Glycoside hydrolase family 28 protein {ECO:0000313|EMBL:AES72873.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00353 | 173391 | 174041 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000353s00015551.1 | PF00190.17 | Cupin_1 | 78 | 189 | 2.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.560 |
| SRR1783600 | control | 5.425 |
| SRR1783602 | moderate drought stress | 1.568 |
| SRR1811619 | moderate drought stress | 1.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.434 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.636 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 28.708 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.600 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.256 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.125 |
| SRR2868004 | Drought Stress (root) | 10.042 |
| SRR2967015 | Control (root) | 7.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.893 |
| SRR9715740 | Leaf | 0.166 |
| SRR9715741 | Leaf | 0.704 |
| SRR9715739 | Root | 1.559 |
| SRR9715742 | Root | 20.239 |
| SRR9715743 | Root | 14.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.990 |
| SRR8749028 | MeJA induced 9h | 1.117 |
| SRR8749029 | MeJA induced 9h | 1.101 |
| SRR8749030 | Uninduced | 0.905 |
| SRR8749031 | Uninduced | 0.642 |
| SRR8749032 | Uninduced | 6.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.317 |
| SRR8400027 | Control - Root | 5.913 |