Gene detail information of Glyur000353s00015545 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G74880.1 | 3.00E-46 | NAD(P)H:plastoquinone dehydrogenase complex subunit O |
| NR | AFK37298.1 | 1.26E-78 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SAK6|I3SAK6_LOTJA | 5.00E-79 | Uncharacterized protein {ECO:0000313|EMBL:AFK37298.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00353 | 151945 | 154735 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000353s00015545.1 | PF11910.3 | NdhO | 80 | 154 | 4.30E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.080 |
| SRR1783600 | control | 5.737 |
| SRR1783602 | moderate drought stress | 8.242 |
| SRR1811619 | moderate drought stress | 8.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.777 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.125 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.621 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.639 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.668 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 65.980 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 67.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.295 |
| SRR2868004 | Drought Stress (root) | 4.203 |
| SRR2967015 | Control (root) | 4.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.551 |
| SRR9715740 | Leaf | 29.391 |
| SRR9715741 | Leaf | 16.211 |
| SRR9715739 | Root | 2.070 |
| SRR9715742 | Root | 4.518 |
| SRR9715743 | Root | 4.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.846 |
| SRR8749028 | MeJA induced 9h | 4.186 |
| SRR8749029 | MeJA induced 9h | 3.362 |
| SRR8749030 | Uninduced | 2.747 |
| SRR8749031 | Uninduced | 1.093 |
| SRR8749032 | Uninduced | 1.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.258 |
| SRR8400027 | Control - Root | 4.450 |