Gene detail

Gene detail information of Glyur000353s00015544

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G19025.1	1.00E-151	DNA repair metallo-beta-lactamase family protein
NR	XP_004502940.1	0	PREDICTED: 5' exonuclease Apollo-like [Cicer arietinum]
COG	YP_001540613.1	5.00E-06	putative mRNA 3-end processing factor [Caldivirga maquilingensis IC-167]
Swissprot	tr\|Q38961\|SNM1_ARATH	1.00E-07	DNA cross-link repair protein SNM1
trEMBL	tr\|G7JBK3\|G7JBK3_MEDTR	0	DNA repair metallo-beta-lactamase family protein {ECO:0000313\|EMBL:AES72863.2}

Sequence

Transcript Sequence

>Glyur000353s00015544.1
CTCGTGATTTCGAACGAGGGCCAAATATTGGCTATTGCTCTCCGGCCGCAACAGAGTCTGAAACCTGAAGAAGGTATTGATAAGCGCCATAAACATGATTATGAGTTGATGATTTGATTGTTAAGATTAAGAGTAAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGCCGATCGAAATGCCGAAAGGGCTACCATTCTCAGTGGACACATGGAGTGCGTGGTCGAGGAGGAGTAAGAGGCAGCATTTCCTCACACACGCCCACAAAGACCATTCCTCTTCCATCACTTCCCACTCCTCTTTCCCCATTTACTCCTCCCCTCTCACCAAATCCCTCCTCCTTCAACATTACCCCCAGCTAGATGCTTCCTTGTTTCTGGACATTGAGGTAGGTCAATCCTTCACCGTCGATGATCCTTCTGGCACCTTCACTGTCACCGCTTTTGATGCCAATCACTGCCCTGGGGCCTTGATGTTCTTGTTTGAAGGCAAATTTGGTAATATTCTGCACACGGGAGATTGCAGGCTCACCCTTGACTGTCTGCTCAACTTGCCTGACAAGTATGTTGGTAAGGAGGGAAAAAAGCCACGCTGCCCTCTTGATTGTGTTTTCTTAGACNGTACTTTTGGCAGTTTCTCTCGGGCCATGCCTACCAAGCATTCTGCTATTCAACAGGTCCGTTCAGCTTATGGAACTACGACGCAGGTTATTAATTGTATATGGAAGCACCCTGATGCATCGACAGTGTATCTGACCTGTGACATGCTCGGTCAGGAAGACATCCTTGTTCATGTGTCCCAAACATTTGGAGCCAAGATATATGTTGATAAAGCCAAATATCCGGAATGTTTCAAGAATCTAGTGGTTACGGTGCCTGAAATCCTTTGTGAAGANCCGTCTTCTCGCTTCCATTTGTTTGATGGATCTCCTGGACTATATGAAAGAGCAAGAGCAAAGCTGGTTGAGGCCAAGGCAACTCTCCAACCCGAGCCTCTCATTGTCCGCCCTTCTGCTCAGTGGTATGCTTGTGAAGAAGAGTCCTCTGATATTGAAAACACTAAAAAGAAGAGGATGAACGAAGCAGTTAAGGATCAGTTTGGTGTTTGGCATGTCTGTTACTCAATGCACTCATCCAAGGAAGAATTGGAATGGGCACTTCAACTTCTTGCACCTAGGTGGGTTGTTTCGACAACCCCCAGCAGCTGCAGGGCTATGGACCTGGATTATGTTAAGAAACACATTTTTAACTCCAAAGTAGGTCTCAATAACTCTATGTGGAAGCTTCTGGATATGACTGTGGAAACTTCTGATGATGTTGATGCATTGGTTAAATCTGTAAGCTGTTGTCCTGTGCTTGAAGGGACCCCTCAGCCTTGTGCGCAAACTAAATCCTTCGTCAAGCAGTGCACTGACGCTAAAGCACCGGAAGAATTGTCTCTTCCTGGGAAACACATGCCTATCACGTTATTTGGAAGAGCAAGGTTTGGTCTCCAGGGTGTAGACTTGTCACGAGGAGGGTGTAATATTTTGCCTGTTAATGTCCCTTCGCACACAGTTTTAAGNGATGCACCACAAGAATTATTGGATGATGTGGAGGATGCTGAAGCGAAATGGGAGAGGTTACCAGAAAGAAAGAAAGATTTATGTCAAGTGAAGTATCAGCAATCCGAGGTTCAGGAAAATGCAAGAGTTCATAAGAGTGCCTCTTATTTAAATATTGAATCCTCAGGATTGAGTGAAAATGTCAGAAAGTTTTACAGGTCAATGAATGTTCCTGTGCCTCAACCTCTTCCCTCCTTAGTCGATCTTATGAATTCCAATAAACGTGCGAAGAGGGGAACTGATTATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00353	149303	152518	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000353s00015544.1	PF12706.2	Lactamase_B_2	28	171	1.10E-09
Glyur000353s00015544.1	PF07522.9	DRMBL	242	345	8.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.537
SRR1783600	control	0.570
SRR1783602	moderate drought stress	0.228
SRR1811619	moderate drought stress	0.263

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.612
DRR006520	Root Summer glycyrrhizin high producing strain	0.515
DRR006521	Root Winter glycyrrhizin high producing strain	0.254
DRR006522	Root Winter glycyrrhizin high producing strain	0.146
DRR006523	Root Summer glycyrrhizin low producing strain	1.231
DRR006524	Root Summer glycyrrhizin low producing strain	1.193
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.721
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.672

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.030
SRR2868004	Drought Stress (root)	1.120
SRR2967015	Control (root)	0.756

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.725
SRR9715740	Leaf	0.555
SRR9715741	Leaf	6.199
SRR9715739	Root	0.394
SRR9715742	Root	7.043
SRR9715743	Root	6.047

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.467
SRR8749028	MeJA induced 9h	1.395
SRR8749029	MeJA induced 9h	0.786
SRR8749030	Uninduced	0.208
SRR8749031	Uninduced	0.136
SRR8749032	Uninduced	0.102

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.171
SRR8400027	Control - Root	1.058