Gene detail

Gene detail information of Glyur000353s00015543.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53570.3	2.00E-175	mitogen-activated protein kinase kinase kinase 3
NR	XP_004502938.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Cicer arietinum]
COG	YP_008153270.1	2.00E-28	hypothetical protein SCE1572_34485 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	1.00E-140	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|G7JBK2\|G7JBK2_MEDTR	0	MAP kinase kinase kinase {ECO:0000313\|EMBL:AES72862.1}

Sequence

Transcript Sequence

>Glyur000353s00015543.1
CCCCTCTTCTCTTCTCTTACGTGTGAACATAACCTAGTCTCTCTCTCTCTCTAGTCTACCCACCCTCCCCTTTTCTCTCTACTCACTCCTCCTCTTCTTCTTCTTGTTCAATTCAACCTCGCTTCTTCTTCCTCCTCTTTTGCCAAATTCGAATTAATTTAGAATGCCCACTTGGTGGGGTAGAAAATCCAGCAAGAGCAAGGAGCAGCCGCAGGAACAAGTGCCACGTGGCAGCGGCGGCGGCGGCGGCCTCCTTCACTTCAGTTTCACCACCAAGTCTTCTCCGACCAGAAACGGTACTGCCAACAAGAAGGGTGGTTGTAATAAGACCGAAAAGCCCAAGAGCTTCGACGATGCGTTTAGGAATTCCCCCAGAGCNAGCAGGGATTTTCTCACTTCTTCCGCCACCGCCGCCGCCGCCGGCTCCTCGTCGGGATTCTCTTGCTGGGATTCCGATNGCGGTGAGAAGAGAGGGCTTCCCTTGCCTCGCCCTTCCGTTTCGTCCAACCAAAGCTTCGGTAACGATCAGGGACTTGTGTTCGGATCTGCTTCGGTCTCTGGTTCTAGCGTCAGCTCCACTGGCTCCTACGATGATCACCCGATTCAAACCTATAACTCTCAGATTAATGGCACCAGAGGACAATGTGAAACGAAGTTCAACAACGTGAGGTCTAAAAGCCCAGGTCCTTGCTCAAGAGGGCCCACCAGCCCTACATCACCTCTTCATCCAAGGTTGCATGTTCTGAGTCTTGACTCCCCTACAGGCAAGCAAGAAGATGGAAGGAGTCAATGTCATCCGTTGCCTCTTCCACCAGGCTCTCCTACTAGTCCTTCTTCTCTTTCCAACACAAGAGCAAATGGAATACAAGAGAACAGTACTAGTAACCGTTCCAAGTGGAAGAAAGGAAAGCTTCTAGGAAGGGGAACATTTGGGCATGTTTACCTGGGATTCAATAGTGAAAGTGGACATATGTGTGCAATAAAAGAAGTCAGGGTTGTCTGTGATGATCAAACCTCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATAAATTTGCTTAGTCAGCTTTCACATCCAAACATTGTTCAATACNATGGGAGTGATTTGGGAGAAGAAGCACTTTCTGTTTATTTGGAATATGTCTCTGGCGGTTCCATTCATAAATTACTTCATGAATATGGGCCCTTCACGGAGCCTGTTATTCAAAATTATACCNGGCAGATTGTCTCTGGACTTGCCTATCTCCATGGGAGAAATACAGTGCATAGGGATATCAAAGGGGCCAACATACTAGTTGATCCTAATGGTGAAGTCAAGCTGGCAGACTTTGGGATGGCTAAACATATAAATTCCTCTTCCTCAATGCTTTCTTTCAAAGGAAGTCCATACTGGATGGCGCCAGAGGTTGTAATGAATACCAATGGCTATAGTCTTCCTGTTGATATTTGGAGCTTAGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAGTCAGTATGAAGGGGTAGCTGCAATATTTAAAATTGGTAACAGCAAAGACATGCCTGAAATTCCTGATCATCTCTCAAATGATGCAAAGAATTTCATTAAGCTATGTTTACAAAGAGAGCCATCGGCTCGACCAACGGCCCAAATGTTACTAGATCACCCCTTTATTCGAGATCAGTCGGCAACAAGAGCTACAAATGTCAGAATAACCAGGGACGCTTTTCCCTACACATTTGATGGAAGCCGGACGCCGCCAATTTTAGAGCCTCATTCCAGTCGAAGTGGCATCACTTCACTGGATGGAGATTATACAACAAAGCCAGTTGGCNCAGCTTCACGAGCATTACGGAGCCCACGGAGCCCAAGAGATAACACAAGAATGATCACATCTTTACCAGTATCTCCCTGTTCAAGTCCATTGCGACAGCACGGNCCAGCACACAAGAGTTGTTTCCTTTCTCCTCCTCACCCAACTTATGCAATGATGGGACAACATAATACCCTCTCTTCATATCCAGTTAGATCAAATGCCACATTCACTCTTGATCCTTGGCATGAAACATCTATATACAGAGCCCACACACCACCCGGTGGATCCCCAAGAACGAGACTCATTTGAGTTGCTGAATGTAAATACCCCACTAAAATTAAAATCTTTCTTGGTCTCCCCCAGCATGCCTTGTGTGCTCTGTGCAGGGTTGAAACTTCATTTCAATCGTAACTATTGAAAGTACAAGACTCTATCTAAAAGATTCTGGTCGATTCTTGACAACATAGACAACGGTAGAGGTGAGGAGTAGGAGAGCTCTCGCGATATAGGCATTGGACTGGGGAGACCTCGCTGCTTGTAACAATTTTTATCGATTACTGTAAATGCAAGGTGTTTACCGTGTTTGTAGTAAGCCTTTATGTTGTATATTGTTGGTCCATCATGGCAGAGAAAAAAACAAATAGAGTAATTTTTCATACATACTCTTTTTCTTTTTTATTTTTACTTGAGAATGACGTGTTTGGAGTATGGTTAATGGTTTGGTACCAAGCCATTGCTTTTTTGGTTGAAAAATGAGACGTCCCCAATGACTTGTTCAATATCCACCTATCCTATTAATAATTTACTATATCATCATTGTATGAATAGGGTCAAAATATAATTGGTAACATAATTTTCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00353	140502	146189	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000353s00015543.1	PF00069.20	Pkinase	245	501	1.70E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.924
SRR1783600	control	52.779
SRR1783602	moderate drought stress	51.491
SRR1811619	moderate drought stress	51.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.594
DRR006520	Root Summer glycyrrhizin high producing strain	57.009
DRR006521	Root Winter glycyrrhizin high producing strain	47.244
DRR006522	Root Winter glycyrrhizin high producing strain	46.417
DRR006523	Root Summer glycyrrhizin low producing strain	120.124
DRR006524	Root Summer glycyrrhizin low producing strain	120.486
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.112
DRR006526	Leaf Summer glycyrrhizin high producing strain	46.890

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.405
SRR2868004	Drought Stress (root)	74.132
SRR2967015	Control (root)	65.328

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.498
SRR9715740	Leaf	68.217
SRR9715741	Leaf	96.704
SRR9715739	Root	63.325
SRR9715742	Root	122.826
SRR9715743	Root	104.285

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	61.973
SRR8749028	MeJA induced 9h	74.040
SRR8749029	MeJA induced 9h	75.803
SRR8749030	Uninduced	134.921
SRR8749031	Uninduced	103.859
SRR8749032	Uninduced	56.583

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.280
SRR8400027	Control - Root	66.250