Gene detail

Gene detail information of Glyur000353s00015531

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64580.1	0	AAA-type ATPase family protein
NR	XP_004502922.1	0	PREDICTED: ATP-dependent zinc metalloprotease FtsH-like isoform X1 [Cicer arietinum]
COG	YP_003885699.1	8.00E-91	ATP-dependent metalloprotease FtsH [Cyanothece sp. PCC 7822]
Swissprot	tr\|O19922\|FTSH_CYACA	1.00E-89	ATP-dependent zinc metalloprotease FtsH {ECO:0000255\|HAMAP-Rule:MF_01458}
trEMBL	tr\|V7AVN6\|V7AVN6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW09707.1}

Sequence

Transcript Sequence

>Glyur000353s00015531.1
TCCCAACACGAGCTTCAGAAACCAGAAAGTAGATATTCACAGTGACATTCGGATATAGCTTAGTTACTAGAGTGGAGTTNAGCGACACCAATGACAAGTTGAAACTCTTCCCGTATCGCCGCTAATCATGAATTCTCAAGCTNCAAATGCAATCGATTTGCTTCAACTCCCAAAACCCTTGTTCCCTCCTAAAACCCTCTTCACCCATTCTTCACCTCGCTCCTCCACCTCTCGTTCTCAACGCCTTCTTAGAACTACATTTAGATTCCCACATAACAAACCTCGCAACTGCACCAATCAATGCAAACTCAGAGTCAATGCTTCCAAATCCAATTCTCGTTCAGATACAGCGGCTTCCAACGAAGAAGACGCCAAGTCTGCTCAGTTATTCGAGAAACTGAAGGAAGCCGAAAGGAAACGGGTAAATGACTTGGAAGAACTTGAAAGGAAGGCTAACTTGCAGTTAGAGAGGCAGCTTGTGATGGCTTCCTCGTGGAGCAGGGCTTTGTTGTCGTTGCGTGGGAAACTGAAGGGAACAGAATGGGATCCTGAAAATTCACACAGGATAGACTTCAGTGATTTTTCGAGACTTCTTGACTCGAATAATGTCCAGTTTCTGGAGTACTCTAACTATGGTCAAACGATATCAGTTATTTTACCATATTACAAAAATGAGAAAGCATCAGGCACTGAAGGGAATTCTAAGGATATTGTTTTTCGGCGTCATGTGGTTGATCGAATGCCAATTGATTGTTGGAATGATGTTTGGAGAAAGTTGCACCAGCAGATTGTAAATGTTGATGTCATTAATGTAGATGCTGTACCTGCTGAAGTATACTCAACGATTGCAACAGCAGTCATATGGTCTATGCGACTTGCCTTGGCTGTTGGATTTTATNTGTGGATTGATAATTTGATGAGACCAATATATGCAAAATTGATACCTTGTGATTTGGGAACTCCTACCCCACAAGCTAGGCAGCCAGTCTTAAGAAGACATTCACTTGGATCTCTAGGCAAGAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAACTACAGGAGATTGTCCGAATTTTAAAGAATGAGGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTACTTCTTCATGGGCCTCCTGGAACTGGTAAAACTTTACTGGCTAAAGCCATTGCAGGTGAAGCAGGGTTGCCTTTTTTTGCAGCTAGTGGCACGGATTTTGTAGAGATGTTTCTAGGGGTTGCTGCATCTCGTGTCAAAGACCTTTTTGCTAGTGCAAGATCATTTGCGCCTTCTATTATTTTTATTGATGAGATCGATGCTATTGGTAGCAAGCGTGGAGGGCCTGATATTGGCGGAGGAGGTGCTGAAAGGGAACAAGGATTACTTCAGATACTGACTGAGATGGACGGCTTCAAAGTTTCCACAGAACAGGTCCTCGTGATAGGNGCTACAAATAGATTGGATATTCTTGATCCTGCTCTATTGAGGAAGGGCCGTTTTGACAAGATCATCAGAGTTGGTTTGCCTTTAAAAGATGGAAGACTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTTTTTCGCTCAGAGGAGGAAAAGGAGATTCTACTTAAGGAAATCGCAGAGCTTACAGAAGATTTTACTGGGGCAGAGCTACAGAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGACTACATTGGGCGAGCTGAGCTGCTTGAGGCATTAAAAAGGCAAAAAGGAACATTTGAAACAGGGCAAGAGGATATTACTGAAGTTCCTGAAGAAATGAAACTGAGATTGGCATACAGAGAGGCAGCTGTTGCTGTTCTTGCTTGTTATTTTCCTGAACCCTACCGCCCTTTTGTTGAGACTGATATAAATTCTATCCGCAGCCAGCCAAATATGCGTTATACTAAAGTTTCTGGACGGGTTTTTGCTAGGAAATCAGATTACATAAACTCTATAGTGCGTGCTTGTGCTCCAAGGGTAATCGAGGAGGAGATGTTTGGGATTGACAACTTGTGTTGGATGTCTGCAAAGGCAACATTAGAAGCTTCAAGACGTGCAGAATTTTTAATTCTGCAGACGGGACTGACTGCTTTTGGGAAAGCATATTACAAAAAAGAAAGTGATCTTGTGCCTAATCTTACAGTGAAGCTTGAAGCTCTCCGAGATGAGTATATGCGTTATGCTACAGAGATGTCTGCATCCGTGNTAAGAGAATACCATTCAGCAGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGAAAATCAAAGCTGAGGAGATTTGGGACATTTATAAGAGTGCTCCTCGTGTAGCTCAGCCATCTGTGAGTCCAGTTGATGAATATGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGAATCAGTCTTCCTGGAAGGGTTACATTTGCGCCAGGCAATGCTGGATTTGTGACATTTGGTGCACCACGCCCTACAGAGGTTTATGCCAAAACCTTGTTTTATAGGTCGCATTGATGTGTCATGCTACTTCTCTTNACTCCTTCATTTTCCTTATCTTCTTTTTACTGCAGACGCAAATTGTTAGTGATGAAACTTGGAAACTAGTAGATGATATCTGGGATAAAAAGGCTCAAGAAATTAGAGACGAAGCTGCAAGGGTGATTGAAGAAGAGAAAGAAAAGCCACAACTTTTGATGGCAAGCCATTTCATCTGAGAGGAACTTATATTTGACCTACAGGTGCTATCTATTGGGGAAGAGAATACAAAACATCAGTCAGTTATGTCACAGAAATACCAATATTGTCACCTCTGATGGAATTCATGGGTCAGACTAGCTCCATCAGGATGTTTTCCTTCCCTTGCTCAGTTCCTTATCAGCAGGAATCTCAACTTGCAATGCATATTATCAAAATGAAGATTGATCCTCTCCCGAACAAACTAGCTGAAGGAGTTTGCATAACTTCATTCAATTTTGTGAAAGAGGCCTTTTTTTTTGTCACAGATGGAGCACTAGGAGTTCTAGTATGAGCTGTTAAGTGAAAGGCATTACTACCCGTATTGTAGTTCATAGGGATACGTTAATGAGGCAATTGTAAATTTATCGATTGACTTNAAATGCTCCTATATATTTGTTACTTTGTGATCATAATCTTTAATGATAAAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00353	31693	38790	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000353s00015531.1	PF00004.24	AAA	351	485	5.30E-40
Glyur000353s00015531.2	PF00004.24	AAA	351	485	5.60E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.405
SRR1783600	control	12.641
SRR1783602	moderate drought stress	10.066
SRR1811619	moderate drought stress	10.054

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.782
DRR006520	Root Summer glycyrrhizin high producing strain	13.181
DRR006521	Root Winter glycyrrhizin high producing strain	3.695
DRR006522	Root Winter glycyrrhizin high producing strain	3.625
DRR006523	Root Summer glycyrrhizin low producing strain	9.497
DRR006524	Root Summer glycyrrhizin low producing strain	10.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.536

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.986
SRR2868004	Drought Stress (root)	10.178
SRR2967015	Control (root)	11.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.513
SRR9715740	Leaf	23.675
SRR9715741	Leaf	16.643
SRR9715739	Root	2.123
SRR9715742	Root	11.384
SRR9715743	Root	11.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.354
SRR8749028	MeJA induced 9h	5.848
SRR8749029	MeJA induced 9h	2.747
SRR8749030	Uninduced	1.478
SRR8749031	Uninduced	0.443
SRR8749032	Uninduced	0.316

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.468
SRR8400027	Control - Root	18.913