Gene detail

Gene detail information of Glyur000353s00015530

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77120.1	0	alcohol dehydrogenase 1
NR	XP_003523232.1	0	PREDICTED: alcohol dehydrogenase-like [Glycine max]
COG	YP_003147226.1	4.00E-147	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Kangiella koreensis DSM 16069]
Swissprot	tr\|P48977\|ADH_MALDO	0	Alcohol dehydrogenase
trEMBL	tr\|I1JY29\|I1JY29_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G39190.1}

Sequence

Transcript Sequence

>Glyur000353s00015530.1
ATGGCTTCACCCACTGCTGGAAAGGTCATACGCTGCAAAGCTGCGGTGGCATGGGAAGCTGGAAAGCCACTGGTGATAGAGGAAGTGGAGGTAGCTCCACCACAGCAAGATGAGGTTCGCCTCAAGATCATGTTCACCTCACTCTGCCACACTGATGTCTACTTCTGGGAAGCTAAGGGACAGAAACCGTTATTTCCACGTATATTTGGTCATGAAGCAGGCGGAATTGTGGAAAGTGTTGGTGAGGGTGTGACTGATCTCAAGCCTGGAGATCATGTGCTTCCAGTGTTCACAGGGGAGTGCAAGGAGTGTCCTCACTGCAAATCAGAGGAAAGTAACATGTGTGACCTGCTAAGGATTAATACTGACCGTGGAGTGATGCTGAGTGATGGCAAGTCAAGGTTTTCAATCAATGGGAAACCAATATACCATTTTGTTGGAACATCCACCTTCAGTGAATACACTGTAGTTCATGTTGGCTGTGTTGCCAAGATCAACCCCTCTGCCCCACTTGACAAAGTTTGTGTTCTGAGCTGTGGAATCTCAACAGGTCTTGGTGCTACATTGAATGTTGCNAAACCAACCATTGGTTCATCAGTAGCTATATTTGGATTGGGAGCAGTAGGACTCGCTGCTGCTGAGGGAGCTAGACTTGCTGGTGCTTCCAGGATAATTGGGGTTGACTTGAATTCCAAGAGATTTATTGAAGCTAAGAAGTTTGGAGTTACTGAGTTTGTGAATCCAAAAGATTATGACAAGCCTGTTCAAGAGGTTATTGTTGCATTGACTGGAGGGGGAGTTGACCGAAGTGTTGAGTGTACTGGAAGTATCAATGCTATGATCTCTGCATTTGAATGTGTGCATGATGGATGGGGTGTTGCTGTACTTGTTGGTGTGCCAAATAAAGATGATGCTTTCAAAACCCATCCAATCAATGTCTTGAATGAAAAGACTCTCAAGGGTACTTTCTTTGGTAACTATAAACCACGTTCTGACCTCCCATCGGTGGTGGAGATGTACATGAATAAGGAACTTGAACTGGAGAAATTCATCACCCATGAAATACCTTTCTCAGAAATCAACAAAGCCTTTGAGTACATGCTTAAAGGGGAGGGCCTACGTTGTATAATCCGCATGTCTGAATAGAATTTCTTTAAATTAATCACTTCTGGTGTTGGAGAATAAAATCTACATGAGCATACATACATGTAGCTGTGGTCAGTGGTCACTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00353	27744	30638	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K18857	ADH1	EC:1.1.1.1	Glycolysis / Gluconeogenesis	map00010
			Fatty acid degradation	map00071
			alpha-Linolenic acid metabolism	map00592
			Tyrosine metabolism	map00350

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0008270 zinc ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000353s00015530.1	PF08240.7	ADH_N	37	163	1.50E-24
Glyur000353s00015530.1	PF00107.21	ADH_zinc_N	207	335	9.40E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.854
SRR1783600	control	1.954
SRR1783602	moderate drought stress	0.799
SRR1811619	moderate drought stress	0.801

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.087
DRR006520	Root Summer glycyrrhizin high producing strain	0.158
DRR006521	Root Winter glycyrrhizin high producing strain	1.305
DRR006522	Root Winter glycyrrhizin high producing strain	1.338
DRR006523	Root Summer glycyrrhizin low producing strain	1.309
DRR006524	Root Summer glycyrrhizin low producing strain	1.429
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.899
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.820

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.324
SRR2868004	Drought Stress (root)	27.233
SRR2967015	Control (root)	32.939

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.893
SRR9715740	Leaf	1.355
SRR9715741	Leaf	0.931
SRR9715739	Root	0.522
SRR9715742	Root	0.891
SRR9715743	Root	0.765

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.352
SRR8749028	MeJA induced 9h	134.697
SRR8749029	MeJA induced 9h	76.650
SRR8749030	Uninduced	3.093
SRR8749031	Uninduced	14.393
SRR8749032	Uninduced	12.158

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	48.661
SRR8400027	Control - Root	17.272